Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40367
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27215| Best HMM Match : PPR (HMM E-Value=3.2)                       29   3.1  
SB_3951| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_52381| Best HMM Match : UPF0004 (HMM E-Value=8.5)                   28   7.1  
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_27215| Best HMM Match : PPR (HMM E-Value=3.2)
          Length = 603

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 259 FTVQPHRGCICLSKPKFINPISFRFLEVLEYTLCFVSTL 375
           FT++P  GC+   K K    + F  L+V++Y    V T+
Sbjct: 131 FTIEPESGCVAAGK-KATFLVKFAPLDVMDYEAALVCTI 168


>SB_3951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
 Frame = +3

Query: 549 DRWRYSYRSNII-----ITYPCNRIL*KHF 623
           D W+   RSNI+     + YPCN  L +HF
Sbjct: 21  DMWKLVLRSNILNFVTRVKYPCNATLLQHF 50


>SB_52381| Best HMM Match : UPF0004 (HMM E-Value=8.5)
          Length = 508

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = -3

Query: 398 SRTPARSNNVDTKHRV--YSSTSRKRKLIGLMN 306
           S  PA S+ V+  H++  YS+T+R++KL+ L N
Sbjct: 53  SLNPALSDRVEIGHQLGRYSNTARQKKLVQLDN 85


>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 284 VSVFRNQNSSTLLVFVFWKCSNTPCVLCLHYCYALGFGINKIPPKY 421
           VS FR+ +   LL F+   C  +   +    C A    I K+ P+Y
Sbjct: 606 VSAFRSDDLPALLTFIPAMCGKSSAAVNPVICLAFSPRIRKVMPRY 651


>SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +1

Query: 352 TLCFVSTLLLRAGVRDK*NSTKVQLKTVFNA*NATNTLKL-SIRFWR 489
           T+ +V+TL+L A +     S    L+TV  + NATNT+ + S+++ R
Sbjct: 182 TISWVATLILVAIISASYRSAFKHLRTVSASNNATNTVDIESVKYRR 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,956,167
Number of Sequences: 59808
Number of extensions: 417466
Number of successful extensions: 892
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)