Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40367
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71258-5|CAA95784.2| 452|Caenorhabditis elegans Hypothetical pr... 29 2.7
AC098856-5|AAR12980.1| 263|Caenorhabditis elegans Hypothetical ... 29 2.7
Z81147-6|CAB03535.1| 506|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF098997-10|AAC68712.2| 325|Caenorhabditis elegans Serpentine r... 28 6.2
Z49907-11|CAF31469.1| 844|Caenorhabditis elegans Hypothetical p... 27 8.2
Z49907-10|CAC42250.1| 875|Caenorhabditis elegans Hypothetical p... 27 8.2
Z49907-9|CAA90092.1| 880|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z48367-8|CAF31471.1| 844|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z48367-7|CAC42266.1| 875|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z48367-6|CAA88325.1| 880|Caenorhabditis elegans Hypothetical pr... 27 8.2
AF319613-1|AAG49523.1| 880|Caenorhabditis elegans CLC-type chlo... 27 8.2
AF173171-1|AAF13164.1| 844|Caenorhabditis elegans CLC chloride ... 27 8.2
AF100307-7|AAC68934.1| 353|Caenorhabditis elegans Hypothetical ... 27 8.2
>Z71258-5|CAA95784.2| 452|Caenorhabditis elegans Hypothetical
protein C01H6.6 protein.
Length = 452
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 435 IQRLERNKHFKTLNSLLALCFSSVLVLLDPSIFVRFFG 548
+ RL RN +F + + CF ++ + L + F F+G
Sbjct: 147 VMRLRRNSNFVLVTIIFGNCFCNISITLLMNYFAEFYG 184
>AC098856-5|AAR12980.1| 263|Caenorhabditis elegans Hypothetical
protein Y37F4.5 protein.
Length = 263
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 263 LYSHIEGVSVFRNQNSSTLLVFVFWKCSNTP 355
L S I G+SV++ + F++WKC N P
Sbjct: 54 LKSKIPGLSVYKVRRIEDNHSFLYWKCENMP 84
>Z81147-6|CAB03535.1| 506|Caenorhabditis elegans Hypothetical
protein T09E11.8 protein.
Length = 506
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 335 WKCSNTPCVLCLHYCYALGFGINKIPPKYN*KLYSTLRTQ 454
W C NT C + A FG +PP +LY L T+
Sbjct: 79 WFCLNTTCSDYFYCSMATRFGSVSLPPHSPHQLYINLSTE 118
>AF098997-10|AAC68712.2| 325|Caenorhabditis elegans Serpentine
receptor, class i protein43 protein.
Length = 325
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 453 NKHFKTLNSLLALCFSSVLVLLDPSI 530
N H K +NSLLA F++VLVLL P +
Sbjct: 230 NHHKKVINSLLAQ-FAAVLVLLLPGL 254
>Z49907-11|CAF31469.1| 844|Caenorhabditis elegans Hypothetical
protein B0491.8c protein.
Length = 844
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 109 YWNPFYQCVCTDVPIRCANE*IFSREYRNWVSFFYSR 219
YW F C+ + RCAN + + + +F+ +R
Sbjct: 240 YWRGFLAATCSAIVFRCANFFVTAEQSGTITAFYQTR 276
>Z49907-10|CAC42250.1| 875|Caenorhabditis elegans Hypothetical
protein B0491.8b protein.
Length = 875
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 109 YWNPFYQCVCTDVPIRCANE*IFSREYRNWVSFFYSR 219
YW F C+ + RCAN + + + +F+ +R
Sbjct: 271 YWRGFLAATCSAIVFRCANFFVTAEQSGTITAFYQTR 307
>Z49907-9|CAA90092.1| 880|Caenorhabditis elegans Hypothetical
protein B0491.8a protein.
Length = 880
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 109 YWNPFYQCVCTDVPIRCANE*IFSREYRNWVSFFYSR 219
YW F C+ + RCAN + + + +F+ +R
Sbjct: 271 YWRGFLAATCSAIVFRCANFFVTAEQSGTITAFYQTR 307
>Z48367-8|CAF31471.1| 844|Caenorhabditis elegans Hypothetical
protein B0491.8c protein.
Length = 844
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 109 YWNPFYQCVCTDVPIRCANE*IFSREYRNWVSFFYSR 219
YW F C+ + RCAN + + + +F+ +R
Sbjct: 240 YWRGFLAATCSAIVFRCANFFVTAEQSGTITAFYQTR 276
>Z48367-7|CAC42266.1| 875|Caenorhabditis elegans Hypothetical
protein B0491.8b protein.
Length = 875
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 109 YWNPFYQCVCTDVPIRCANE*IFSREYRNWVSFFYSR 219
YW F C+ + RCAN + + + +F+ +R
Sbjct: 271 YWRGFLAATCSAIVFRCANFFVTAEQSGTITAFYQTR 307
>Z48367-6|CAA88325.1| 880|Caenorhabditis elegans Hypothetical
protein B0491.8a protein.
Length = 880
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 109 YWNPFYQCVCTDVPIRCANE*IFSREYRNWVSFFYSR 219
YW F C+ + RCAN + + + +F+ +R
Sbjct: 271 YWRGFLAATCSAIVFRCANFFVTAEQSGTITAFYQTR 307
>AF319613-1|AAG49523.1| 880|Caenorhabditis elegans CLC-type
chloride channel CLH-2b protein.
Length = 880
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 109 YWNPFYQCVCTDVPIRCANE*IFSREYRNWVSFFYSR 219
YW F C+ + RCAN + + + +F+ +R
Sbjct: 271 YWRGFLAATCSAIVFRCANFFVTAEQSGTITAFYQTR 307
>AF173171-1|AAF13164.1| 844|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 844
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 109 YWNPFYQCVCTDVPIRCANE*IFSREYRNWVSFFYSR 219
YW F C+ + RCAN + + + +F+ +R
Sbjct: 240 YWRGFLAATCSAIVFRCANFFVTAEQSGTITAFYQTR 276
>AF100307-7|AAC68934.1| 353|Caenorhabditis elegans Hypothetical
protein T12B5.10 protein.
Length = 353
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 122 KGFQYIKVSNRISFVSA--FFHIDCFYIHHI 36
K + +K+ ++I+ + FFH CF I+HI
Sbjct: 239 KNAEVVKIGSKIASIMIVHFFHFKCFTINHI 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,114,796
Number of Sequences: 27780
Number of extensions: 334782
Number of successful extensions: 899
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -