Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40367
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH...    29   3.3  
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH...    29   3.3  
At2g23630.1 68415.m02819 multi-copper oxidase type I family prot...    29   3.3  
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3...    28   4.4  
At4g12560.1 68417.m01982 F-box family protein contains F-box dom...    28   4.4  
At1g06580.1 68414.m00697 pentatricopeptide (PPR) repeat-containi...    28   5.8  

>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 742

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 547 PKNRTNIEGSSSTRTLEKHNARSELRVLKC 458
           P  R   EG    R +E+ N  ++LR+L C
Sbjct: 362 PARRAKKEGEYKHRAVERENTNTQLRILTC 391


>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 810

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 547 PKNRTNIEGSSSTRTLEKHNARSELRVLKC 458
           P  R   EG    R +E+ N  ++LR+L C
Sbjct: 430 PARRAKKEGEYKHRAVERENTNTQLRILTC 459


>At2g23630.1 68415.m02819 multi-copper oxidase type I family protein
           contains Pfam profile: PF00394 Multicopper oxidase
          Length = 541

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 450 RNKHFKTLNSLLALCFSSVLVL--LDPSIF 533
           + KH   L  LLA CFSSV V+   DP +F
Sbjct: 2   KQKHLLLLGFLLAYCFSSVFVINAEDPYLF 31


>At5g15580.1 68418.m01824 expressed protein unknown protein F14P3.18
           - Arabidopsis thaliana, EMBL:AC009755
          Length = 927

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 408 FHQSTTKNCIQRLERNKHFKTLNSLLALCFSSVLVLLDPSI 530
           F Q  T N ++R +R   F T+N +LA  F++      PSI
Sbjct: 782 FGQQQTVNLVERSKRKLIFDTINEILAHRFAAEGCTKQPSI 822


>At4g12560.1 68417.m01982 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 413

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 260 KYRIRVSFIRVFTIRE*KNDTQFLYSRLNIYS 165
           +Y +R S+ +VFT+++ K+   F Y R  +YS
Sbjct: 290 EYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYS 321


>At1g06580.1 68414.m00697 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 500

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 242 KREYDILLYSHIEGVSVFRNQNSSTLLVFVFWKCSNTPCVL-CLHYCYALGF 394
           K E  I L+ H+E + +  +  S T L+  F +C+     L CL     LGF
Sbjct: 94  KYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGF 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,925,480
Number of Sequences: 28952
Number of extensions: 296148
Number of successful extensions: 683
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)