Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40366
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    28   1.1  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    28   1.4  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    26   4.4  
SPAC4G8.02c |sss1||translocon gamma subunit Sss1|Schizosaccharom...    26   4.4  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    26   4.4  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   5.8  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    25   7.6  

>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 367  SERVSNLLRSTISHCFDADPE 305
            +E++S+L R  I  CF+ DPE
Sbjct: 1272 NEKISSLARDFIEQCFERDPE 1292


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 227 PLDLV*LLRTSGHQRKLLGPYHCQK 301
           PL+ V LL+ +GH+RKL  P  C +
Sbjct: 41  PLEDVWLLKLAGHKRKLEEPLSCMR 65


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 279 WGHIIAKNNSGSASKQWLIVDLNRFDTLSEHHEK 380
           +G++I    SG    +W++ +  +FD L + + K
Sbjct: 373 FGYVIDNIRSGKIDPRWMVTNKIKFDDLPDAYNK 406


>SPAC4G8.02c |sss1||translocon gamma subunit
           Sss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 70

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 550 PITFFKEGIRNIRRCVSP 497
           P  F+KEG   I+RCV P
Sbjct: 12  PKNFYKEGSHFIKRCVKP 29


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 43  KEDSESVPGTSIDF-SSYPGSITSQDEF 123
           +ED+E VPG S D  SS+  + +S++EF
Sbjct: 14  EEDTEFVPGDSTDTESSFSDADSSEEEF 41


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = +2

Query: 494 PWAHASADISDAF---FEKGYWATY 559
           PW    ADISD F   F++  WA Y
Sbjct: 130 PWRKPGADISDYFNYGFDEFTWAAY 154


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -2

Query: 272 YVGGQMFAAVIRGPAGTCSVMLTS 201
           Y GGQ+F+AVI   AG  SV LT+
Sbjct: 132 YWGGQIFSAVI---AGAASVTLTN 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,844
Number of Sequences: 5004
Number of extensions: 68890
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)