Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40366
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    33   0.21 
08_02_0623 - 19429029-19430207                                         31   0.64 
03_06_0546 - 34646946-34647289,34647542-34647608                       30   2.0  
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665...    29   4.5  
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431...    28   6.0  

>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 203 KSTLLSKFPLDLV*LLRTSGHQRKLLGPYHCQKQFRIRIEAVAD 334
           K T++   P+D+V LL  + H+R+L+    C    RI+ +  AD
Sbjct: 609 KQTMIDDIPMDIVELLAKNQHERQLMTETDCSDINRIQSKTTAD 652


>08_02_0623 - 19429029-19430207
          Length = 392

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +1

Query: 52  SESVPGTSIDFSSYPGSITSQDEFYLVKGNKHRMAVAGTALRNYN 186
           + +VP +S   SS P + TS     LVKG  HR  VAG +L+  N
Sbjct: 4   ASNVPPSSSTSSSSPHNTTSTHSTELVKGT-HRFTVAGFSLQKRN 47


>03_06_0546 - 34646946-34647289,34647542-34647608
          Length = 136

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 433 CFTSFEISVTTSLCPCLCFSWCSERVS 353
           CF   E+   T++CPC+ F   +E VS
Sbjct: 16  CFNDCEVCCLTTVCPCITFGRSAEIVS 42


>11_04_0071 - 13165019-13165082,13165345-13165428,13166325-13166524,
            13166756-13170655
          Length = 1415

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 462  GKGLVELVEQVPGLTHLRIFLMPSLKKVIG 551
            G   +E +  +P L HLRIF  PSL K  G
Sbjct: 1229 GLSALEGLHSLPKLKHLRIFQCPSLAKTWG 1258


>01_07_0359 - 43042675-43042758,43042956-43043024,43043099-43043159,
            43043260-43043768,43044545-43045153,43045697-43045972,
            43046581-43046769,43047006-43047116,43047621-43047908,
            43047990-43048041,43048648-43048824,43049249-43049314,
            43049675-43049929,43050071-43050577,43050807-43050886,
            43050974-43051207
          Length = 1188

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
 Frame = +3

Query: 147  SNGSCWNRIEKLQ*Q-ALAGSQHY*ASSRWTSYNC--CEHLAT--NVSSWGHIIAKNNSG 311
            ++GS W++I+KLQ +  +AGSQ   +SS  +   C  C  L +  N   WG +   +   
Sbjct: 835  TDGSIWSKIQKLQDEIEVAGSQDL-SSSEVSLPVCLLCGLLKSKHNFIRWGFLYVLDKFL 893

Query: 312  SASKQWLIVDLNRFDTLSEHHEKQRHGHSEVVTEISNDVKHTIYRSNNSHGKGLVELVEQ 491
               K  L+ D +  +     H K R   +  V +I N     + ++N +    ++++ + 
Sbjct: 894  MRCK-LLLDDNDMQEHTVADHSKHRLDKAFAVIDIMNSALLLVVQNNETDHINILKMCDM 952

Query: 492  VPGLTHLRI 518
            +     LR+
Sbjct: 953  LFSQLCLRL 961


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,269,709
Number of Sequences: 37544
Number of extensions: 460227
Number of successful extensions: 1330
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)