Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40366
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83104-4|CAB05478.2|  582|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AL032626-2|CAA21539.1|  571|Caenorhabditis elegans Hypothetical ...    41   7e-04
AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical ...    34   0.11 
Z67990-5|CAA91936.2|  638|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AB012617-1|BAA33488.1|  638|Caenorhabditis elegans FLR-1 protein.      29   2.3  

>Z83104-4|CAB05478.2|  582|Caenorhabditis elegans Hypothetical
           protein F09B12.3 protein.
          Length = 582

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 27/85 (31%), Positives = 40/85 (47%)
 Frame = +1

Query: 1   RILKRYKLNYHKTSKEDSESVPGTSIDFSSYPGSITSQDEFYLVKGNKHRMAVAGTALRN 180
           R++K YK  Y      D +  PG +  FSSYPG + S D+F L       +AV  T +  
Sbjct: 266 RVIKLYKFGY------DRQFYPGYASSFSSYPGLLYSSDDFALQTSG---LAVIETTISV 316

Query: 181 YNNKLWQEVNITEQVPAGPRITAAN 255
           +N  L++      Q+P   R   +N
Sbjct: 317 FNTSLFENTKPVGQLPTWIRAIVSN 341



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 231 WTSYNCCEHLATNVSSWGHIIAKNNSGSASKQWLIVDLNRF 353
           W        LA +   W  + +  NSG+ + QW ++D  +F
Sbjct: 334 WIRAIVSNQLARDAREWCKLYSLYNSGTYNNQWAVLDYKKF 374


>AL032626-2|CAA21539.1|  571|Caenorhabditis elegans Hypothetical
           protein Y37D8A.2 protein.
          Length = 571

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 20/43 (46%), Positives = 25/43 (58%)
 Frame = +1

Query: 64  PGTSIDFSSYPGSITSQDEFYLVKGNKHRMAVAGTALRNYNNK 192
           PG    FSSYP SITS D+F L      ++A+  T + NYN K
Sbjct: 252 PGQIYSFSSYPASITSTDDFVLTSA---KLAILETTIGNYNEK 291



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 14/77 (18%), Positives = 32/77 (41%)
 Frame = +3

Query: 231 WTSYNCCEHLATNVSSWGHIIAKNNSGSASKQWLIVDLNRFDTLSEHHEKQRHGHSEVVT 410
           W         A++   W     ++NSG+ + +W++VD  +F     H  K+    + ++ 
Sbjct: 304 WIRAEIAHRTASSGLQWAEAFGRHNSGTYNNEWVVVDYKQF-----HRGKEVQPETGIIH 358

Query: 411 EISNDVKHTIYRSNNSH 461
            +     H ++    +H
Sbjct: 359 VVEQMPGHIVHSDKTAH 375


>AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.8 protein.
          Length = 581

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 1   RILKRYKLNYHKTSKEDSESVPGTSIDFSSYPGSITSQDEF 123
           R+LK YK  Y      D   VPG  + FS YPG + S D++
Sbjct: 257 RVLKIYKFGY------DVNEVPGHIVTFSGYPGVLISTDDY 291


>Z67990-5|CAA91936.2|  638|Caenorhabditis elegans Hypothetical
           protein F02D10.5 protein.
          Length = 638

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 240 YNCCEHLATNVSSWGHIIAKNNSGSASKQW 329
           +NCCEH+ T ++  G     +N     +QW
Sbjct: 182 HNCCEHVTTEMTEVGVCFRLSNVNKKYRQW 211


>AB012617-1|BAA33488.1|  638|Caenorhabditis elegans FLR-1 protein.
          Length = 638

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 240 YNCCEHLATNVSSWGHIIAKNNSGSASKQW 329
           +NCCEH+ T ++  G     +N     +QW
Sbjct: 182 HNCCEHVTTEMTEVGVCFRLSNVNKKYRQW 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,307,286
Number of Sequences: 27780
Number of extensions: 389978
Number of successful extensions: 1144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)