Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40365
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 101 7e-23
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 42 8e-05
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.33
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 29 0.58
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.3
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 1.8
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.1
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 26 5.4
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 7.1
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 7.1
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 9.4
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 9.4
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 9.4
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 101 bits (243), Expect = 7e-23
Identities = 45/83 (54%), Positives = 65/83 (78%)
Frame = +2
Query: 260 IRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKL 439
+R LRG++ ++MGKNTM+R+A++ +++ P LE+LLP ++GNVGFVFT DL EVR+ +
Sbjct: 41 VRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETI 100
Query: 440 LENKVQAPARPGAIAPLSVVIPA 508
+ N + APARP AIAPL V +PA
Sbjct: 101 IANVIAAPARPNAIAPLDVFVPA 123
Score = 65.7 bits (153), Expect = 5e-12
Identities = 30/45 (66%), Positives = 36/45 (80%)
Frame = +1
Query: 511 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASE 645
NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++ KVG SE
Sbjct: 125 NTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSE 169
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 162 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQM 254
K+ YF K+ L ++Y F+V DNV SQQM
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQM 38
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 41.9 bits (94), Expect = 8e-05
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Frame = +2
Query: 254 EQIRISLRGSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDL 418
++IR +GS I MGK +M KA+ ++H +N L KLL G VG +FT
Sbjct: 54 KRIRDDWKGSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKP 109
Query: 419 VEVRDKLLENKVQAP-ARPGAIAPLSVVIPA 508
EV E+ VQ AR GA+AP + VIPA
Sbjct: 110 DEVIG-YFESFVQNDFARAGAVAPFTHVIPA 139
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 291 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 398
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 29.1 bits (62), Expect = 0.58
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 357 RAGLLSRWSLMALRIIVFFPMSTILEPRSEIRI 259
+A W LM + +++F + ILEPR R+
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPRKRKRL 194
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 435 NCWRTKSKLQLVLVPLPHCQSSFPPQHRPRSREDLFLPGSFYPYQDF 575
N T L L L L S FP +H SR+ P ++PY F
Sbjct: 419 NSTLTSPSLDLRLELLHDVLSCFPKKHDSTSRKKPKFPYQYFPYMKF 465
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 435 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 310
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 450 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 289
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -1
Query: 254 HLLRAHVIGTHDETFWVLVQELD---DLNEVVRLPSSLV 147
H L +V G HD +FW L ++L D +++ P S V
Sbjct: 202 HELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGSYV 240
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 60 FVPHGSRAFCLVLKFHRSPYA 122
F+PHG+R + +LK+ R Y+
Sbjct: 313 FLPHGARIYNTLLKYMRYQYS 333
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 603 IVDDFNSTL*NLGRDRKSL 547
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 9.4
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -3
Query: 492 DNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSFSRAGL 346
+ G++ P AGAW L N L T + +NT P PL G FS L
Sbjct: 151 EEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIFSEEEL 199
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 59 ICPARKSCVLSCP*ISSKSLRH 124
I PA++ LSCP + SK + H
Sbjct: 490 IVPAKERAYLSCPKVWSKIINH 511
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +3
Query: 324 PSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSF 503
PS + W T+ SR SR +S SP+ S + + K L L+ + +S++
Sbjct: 187 PSNSYWKTVIGSREMFEDSRKKTSSPSPSFASSKDAGTIPAIQKKKSL-LIEMMETESTY 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,378
Number of Sequences: 5004
Number of extensions: 65160
Number of successful extensions: 182
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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