Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40365
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 98 6e-21
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 97 8e-21
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 97 8e-21
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 31 0.60
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.60
06_01_0080 + 644021-645463 29 2.4
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 29 4.2
06_01_0494 + 3539804-3539949,3540466-3540826 29 4.2
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225... 29 4.2
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 29 4.2
03_04_0243 + 19298293-19299117 28 5.6
11_01_0355 + 2679561-2680985,2681183-2682295 28 7.4
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 28 7.4
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 28 7.4
11_08_0037 + 27859867-27860382,27860471-27861440,27861647-278619... 27 9.7
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 27 9.7
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 9.7
02_01_0152 - 1070249-1070296,1070443-1070515,1070601-1070671,107... 27 9.7
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 97.9 bits (233), Expect = 6e-21
Identities = 47/86 (54%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Frame = +2
Query: 254 EQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEV 427
++IR LRG SIVLMGKNT++R+ IK H DN N +L+P + GNVG +FT+GDL EV
Sbjct: 42 QEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEV 101
Query: 428 RDKLLENKVQAPARPGAIAPLSVVIP 505
R+++ + KV APAR G +AP+ VV+P
Sbjct: 102 REEVAKYKVGAPARVGLVAPVDVVVP 127
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/45 (68%), Positives = 38/45 (84%)
Frame = +1
Query: 511 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASE 645
NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE
Sbjct: 130 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSE 174
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/38 (52%), Positives = 23/38 (60%)
Frame = +3
Query: 141 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQM 254
+ KA K Y K+ QLLDEY K I ADNVGS Q+
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQL 41
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 97.5 bits (232), Expect = 8e-21
Identities = 47/86 (54%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Frame = +2
Query: 254 EQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEV 427
++IR LRG SIVLMGKNT++R+ IK H DN N +L+P + GNVG +FT+GDL EV
Sbjct: 42 QEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEV 101
Query: 428 RDKLLENKVQAPARPGAIAPLSVVIP 505
R+++ + KV APAR G +AP+ VV+P
Sbjct: 102 REEVAKYKVGAPARVGLVAPVDVVVP 127
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/45 (68%), Positives = 38/45 (84%)
Frame = +1
Query: 511 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASE 645
NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE
Sbjct: 130 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSE 174
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/38 (52%), Positives = 23/38 (60%)
Frame = +3
Query: 141 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQM 254
+ KA K Y K+ QLLDEY K I ADNVGS Q+
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQL 41
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 97.5 bits (232), Expect = 8e-21
Identities = 47/86 (54%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Frame = +2
Query: 254 EQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEV 427
++IR LRG SIVLMGKNT++R+ IK H DN N +L+P + GNVG +FT+GDL EV
Sbjct: 42 QEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEV 101
Query: 428 RDKLLENKVQAPARPGAIAPLSVVIP 505
R+++ + KV APAR G +AP+ VV+P
Sbjct: 102 REEVAKYKVGAPARVGLVAPVDVVVP 127
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/45 (68%), Positives = 38/45 (84%)
Frame = +1
Query: 511 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASE 645
NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE
Sbjct: 130 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSE 174
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/38 (52%), Positives = 23/38 (60%)
Frame = +3
Query: 141 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQM 254
+ KA K Y K+ QLLDEY K I ADNVGS Q+
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQL 41
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 31.5 bits (68), Expect = 0.60
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +2
Query: 266 ISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDK 436
I L + L+ + ++ L N AL+KL LPH ++GN+GF+ + + ++ D
Sbjct: 372 IGLLQKLVYLLLSANQLSGSVPRTLGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDL 431
Query: 437 LLENKVQAPARPGAIAPLS 493
+L++ A P + LS
Sbjct: 432 ILDHNSFVGALPDHLGNLS 450
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.5 bits (68), Expect = 0.60
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +2
Query: 350 PALEK-LLPHIKGN---VGFVFTRGDLVEV--RDKLLENKVQAPARPGAIAPLSVVIPA 508
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>06_01_0080 + 644021-645463
Length = 480
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 603 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVAG 502
I+D N N R K++EERGLL+ GV G
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGG 133
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 66 PHGSRAF---CLVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPK 212
PH S A CL L+F T R R K T K + II++L+ YP+
Sbjct: 802 PHASSADIDKCLFLEFLMLMTCTTIRNSRSFKFTHKKFGYWMIIEMLNSYPR 853
>06_01_0494 + 3539804-3539949,3540466-3540826
Length = 168
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/62 (35%), Positives = 25/62 (40%)
Frame = +3
Query: 366 CCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPQHRPRSREDLFL 545
C R L CS E L + TKS + L L H SS P RPR R +
Sbjct: 8 CILRKRGKLYKCSALEHRLYNKKQI--TKSVISLKLALQQHSTSSSSPFSRPRERINEPS 65
Query: 546 PG 551
PG
Sbjct: 66 PG 67
>03_06_0323 +
33121062-33121653,33121748-33121839,33122482-33122565,
33123126-33123203,33123500-33123700,33123821-33123928,
33124145-33124219,33124338-33124537,33124654-33124722,
33125159-33125279,33126840-33127120,33127522-33127594
Length = 657
Score = 28.7 bits (61), Expect = 4.2
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 1/125 (0%)
Frame = +3
Query: 183 IIQLLDEYPKCFIVGADNVGSQQMSRSVSRYVAPVSCS-WEKTQ*CAKPSKTTWTTIQPS 359
+I LL PK G Q R V + +P S T+ C + +
Sbjct: 511 VICLLAYKPKPSFAPTPRAGEQLNMRLVEKGPSPSSTEPGTDTESCTNKQGPV-AAEENN 569
Query: 360 RNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPQHRPRSREDL 539
+ CC +A++A + E + + KL L + +PHC FP + R
Sbjct: 570 KKCCPRKQASMALGTEIEERKKELL-------KLMLQMKNIPHCDECFPNKEEQWIR--- 619
Query: 540 FLPGS 554
FL GS
Sbjct: 620 FLQGS 624
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 406 GEHEANVALDVWQQFLEGWIVVQVVFDGFAHH 311
G HEA+ L W+ + GW + F GFA H
Sbjct: 189 GNHEASNYL--WELYYGGWAAPNIYFLGFAGH 218
>03_04_0243 + 19298293-19299117
Length = 274
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -3
Query: 501 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLMCGNSFS 358
+ TD+ + APG A A + S SRTS +P ++ PT P +S +
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSPRRARSSLT 217
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 339 WTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKL 461
W ++ HTS TL+ SP+ +S+ T+C+ + +
Sbjct: 480 WNPMRNGSAPHHTSELTLSFSSPSPSSISGYTSCYNNNNMM 520
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -2
Query: 478 GTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGW 350
G +WS F +LN +S H+ V L+ W + W
Sbjct: 197 GNAENWSSQGDKDDFYNELNTISEARHKNLVKLEGWCCHINAW 239
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 27.9 bits (59), Expect = 7.4
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = +3
Query: 99 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFI--VGADNVGSQQMSRSVSR 272
K H S A + ++ TW N VK L+E + + + N + Q+ S
Sbjct: 111 KIHASDVADAEQKDTSNQQTWDYNELVKKYYELEEQSRKVLEQLHQTNYWNYQVPGQSSV 170
Query: 273 YVAPVSCSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNC 440
Y P ++ T P +TIQ C + +++ CS +TS V++C
Sbjct: 171 YQQPQVPAYSAT--APDPHS---STIQSPCCCANVPLVSVSCCSTGQTS--GVSSC 219
>11_08_0037 +
27859867-27860382,27860471-27861440,27861647-27861991,
27862074-27862693
Length = 816
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 362 KLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP 463
KLLP VGFV RG V+ +K+++ P
Sbjct: 464 KLLPLDANKVGFVNVRGPHVQAPEKIMDGDYTGP 497
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 373 WQQFLEGWIVVQVVFDGFAHHCV 305
W FLEGW V F+G A H V
Sbjct: 356 WSPFLEGWNSPAVQFEGPAVHVV 378
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 162 KSNYFVKIIQLLDEYPKCF 218
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>02_01_0152 -
1070249-1070296,1070443-1070515,1070601-1070671,
1070768-1070874,1071836-1072007
Length = 156
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 302 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLE 445
K T RK HL N AL K+ V +G L+E+ D+L++
Sbjct: 86 KVTGKRKRNAQHLQENSALCKVCTSSNSFVVRCCVKGSLLEINDRLIK 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,190,620
Number of Sequences: 37544
Number of extensions: 481285
Number of successful extensions: 1370
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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