Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40365
(647 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 128 4e-30
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.050
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034) 30 1.9
SB_24713| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 29 3.3
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 29 4.3
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 5.7
SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23) 28 7.5
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69) 27 9.9
SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5) 27 9.9
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 27 9.9
SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6) 27 9.9
SB_23441| Best HMM Match : IncA (HMM E-Value=2.5) 27 9.9
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 128 bits (309), Expect = 4e-30
Identities = 63/105 (60%), Positives = 76/105 (72%)
Frame = +2
Query: 194 LGRVPKMFHRGCR*RGLATDEQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLP 373
L PK+F G G + IR SLRG VLMGKNTM+RKAI+ HL+NNP LEKLLP
Sbjct: 3 LDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKLLP 62
Query: 374 HIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPA 508
HIKGN+GFVFT+ DL +VR ++ENKV APA+ G IAP+ V +PA
Sbjct: 63 HIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPA 107
Score = 74.9 bits (176), Expect = 5e-14
Identities = 33/43 (76%), Positives = 40/43 (93%)
Frame = +1
Query: 511 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 639
NTGLGPEKTSFFQAL+IPTKI++GTIEIINDVH++K +K+ A
Sbjct: 109 NTGLGPEKTSFFQALAIPTKIARGTIEIINDVHLIKKDEKLKA 151
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +3
Query: 189 QLLDEYPKCFIVGADNVGSQQM 254
Q LDEYPK F+VG DNVGS+QM
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQM 22
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 35.1 bits (77), Expect = 0.050
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 302 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 418
K T++RK +K HLDN P L K LP + G + + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 3404
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 549 LEERGLLWTEAGVVAGMTTDNGAMA--PGRAGAWTLFSNSLSRTST 418
+ ++ +++ + VV+GM+ D G + R GAW F N L RT +
Sbjct: 2589 ISKKSVIFNDTVVVSGMSADKGVLGVFQERYGAWR-FVNELGRTES 2633
>SB_24713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -1
Query: 221 DETFWVLVQELDDLNEV-VRLPSSLVLPTHPG*CGVGTSMKFKDKT-KRTTSVRDKF 57
D+ FW++V+EL+ NE+ + + L G G S + ++K KR ++R++F
Sbjct: 144 DDEFWLIVRELERYNELKAAIRARHGLAPRDEKSGKGPSPEAREKAKKRARTIREEF 200
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -3
Query: 603 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVAG 502
I+D NS + R K+LEERGLL+ +GV G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGG 177
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 635 PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 519
P P F+ C +L+ ++ ++ + RAW+KEV S R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 447 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 337
FS+S + T KP +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
Length = 936
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Frame = -3
Query: 552 SLEERGLLWTE------AGVVAGMTTDNGAMAPGRAGAW 454
+LE RGLL+++ AGV+AG+ D A G +GA+
Sbjct: 795 TLESRGLLYSDVIAGLIAGVIAGLLVDPSLDARGLSGAF 833
>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1925
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -1
Query: 635 PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWR 504
P +S + T +++ P + V + + +F GP VLWR
Sbjct: 1604 PAVSSTNNVITKRLLNKFPHPVTVAFVQVFSTALFMGPTLVLWR 1647
>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
Length = 430
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 345 TIQPSRNCCHTSRATLAS-CSPAETSLRSVTNCWRTKSKLQLVLVPL 482
+I+P+R C HTS L++ S+R C T SK+ V L
Sbjct: 71 SIRPARCCQHTSSKVLSTYVQQGVVSIRPARCCQHTSSKVLSTYVQL 117
>SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)
Length = 152
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 257 QIRISLRGSSIVLMGKNTMMRKAIKDHLDNNP 352
Q+R L S +L+G NT+++ A+ D L P
Sbjct: 23 QVRPGLTALSTILLGANTVIQAALPDILAKTP 54
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +3
Query: 345 TIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPQHRP 521
T+ P + CC+ +A A+ +P + + T T++ + P P C P P
Sbjct: 624 TLCPQK-CCNKGKAAAAAAAPTKPPTAAPTTAAATQAAPAAMTCPQPACAPQSPMSCMP 681
>SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)
Length = 342
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 333 TTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTN 437
TTWT ++ S R LA CS TS R+ TN
Sbjct: 67 TTWTALRGSTTSYRRRRTFLAPCS-INTSQRTSTN 100
>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
Length = 927
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 254 EQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA--LEKLLPHIKGNVGFVFTRGD 415
+Q I RG++ +++ K T + + + + L N+ L K IKGN FVF+ GD
Sbjct: 437 DQSGIMRRGTNKLVI-KYTNIERCLFNKLKNDLGHFLPKYKGFIKGNFSFVFSTGD 491
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,894,359
Number of Sequences: 59808
Number of extensions: 539160
Number of successful extensions: 1419
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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