Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40365
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 95 4e-20
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 95 4e-20
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 94 8e-20
At1g71160.1 68414.m08211 beta-ketoacyl-CoA synthase family prote... 31 0.50
At1g49720.1 68414.m05574 ABA-responsive element-binding protein ... 31 0.66
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 2.0
At3g07970.1 68416.m00974 polygalacturonase, putative / pectinase... 29 3.5
At3g17280.1 68416.m02209 F-box family protein contains Pfam PF00... 28 4.7
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 6.1
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 6.1
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con... 28 6.1
At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR ... 27 8.1
At3g19560.1 68416.m02480 F-box family protein contains weak hit ... 27 8.1
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 95.1 bits (226), Expect = 4e-20
Identities = 46/90 (51%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
Frame = +2
Query: 254 EQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEV 427
+ IR LRG S+VLMGKNTMM+++++ H +N N A+ LLP ++GNVG +FT+GDL EV
Sbjct: 41 QNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEV 100
Query: 428 RDKLLENKVQAPARPGAIAPLSVVI-PATT 514
+++ + KV APAR G +AP+ VV+ P T
Sbjct: 101 SEEVAKYKVGAPARVGLVAPIDVVVQPGNT 130
Score = 70.5 bits (165), Expect = 9e-13
Identities = 31/45 (68%), Positives = 38/45 (84%)
Frame = +1
Query: 511 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASE 645
NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE
Sbjct: 129 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSE 173
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +3
Query: 135 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQM 254
M + KA K Y K+ QL+DEY + +V ADNVGS Q+
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQL 40
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 95.1 bits (226), Expect = 4e-20
Identities = 46/90 (51%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
Frame = +2
Query: 254 EQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEV 427
+ IR LRG S+VLMGKNTMM+++++ H +N N A+ LLP ++GNVG +FT+GDL EV
Sbjct: 41 QNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEV 100
Query: 428 RDKLLENKVQAPARPGAIAPLSVVI-PATT 514
+++ + KV APAR G +AP+ VV+ P T
Sbjct: 101 SEEVAKYKVGAPARVGLVAPIDVVVQPGNT 130
Score = 70.5 bits (165), Expect = 9e-13
Identities = 31/45 (68%), Positives = 38/45 (84%)
Frame = +1
Query: 511 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASE 645
NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE
Sbjct: 129 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSE 173
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +3
Query: 135 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQM 254
M + KA K Y K+ QL+DEY + +V ADNVGS Q+
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQL 40
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 93.9 bits (223), Expect = 8e-20
Identities = 46/90 (51%), Positives = 64/90 (71%), Gaps = 3/90 (3%)
Frame = +2
Query: 254 EQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEV 427
+ IR LRG S+VLMGKNTMM+++++ H D N A LLP ++GNVG +FT+GDL EV
Sbjct: 42 QNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEV 101
Query: 428 RDKLLENKVQAPARPGAIAPLSVVI-PATT 514
+++ + KV APAR G +AP+ VV+ P T
Sbjct: 102 SEEVAKYKVGAPARVGLVAPIDVVVQPGNT 131
Score = 70.5 bits (165), Expect = 9e-13
Identities = 31/45 (68%), Positives = 38/45 (84%)
Frame = +1
Query: 511 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASE 645
NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE
Sbjct: 130 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSE 174
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +3
Query: 150 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQM 254
KA K Y K+ QLL+EY + +V ADNVGS Q+
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQL 41
>At1g71160.1 68414.m08211 beta-ketoacyl-CoA synthase family protein
similar to fatty acid elongase 3-ketoacyl-CoA synthase 1
GB:AAC99312, very-long-chain fatty acid condensing
enzyme CUT1 [GI:5001734]
Length = 460
Score = 31.5 bits (68), Expect = 0.50
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -1
Query: 281 SHVARYGSAHLLRAHVIGTHDETFWVLVQELDDLNEV-VRLPSSLV 147
SH A+Y H++R HV G+ E++ ++Q++D+ +V V L LV
Sbjct: 248 SHKAKYKLQHIIRTHV-GSDTESYESVMQQVDEEGKVGVALSKQLV 292
>At1g49720.1 68414.m05574 ABA-responsive element-binding protein /
abscisic acid responsive elements-binding factor (ABRE)
identical to abscisic acid responsive elements-binding
factor GB:AAF27179 GI:6739274 from [Arabidopsis
thaliana]; identical to cDNA abscisic acid responsive
elements-binding factor (ABRE) mRNA, complete cds
GI:6739273
Length = 392
Score = 31.1 bits (67), Expect = 0.66
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = -3
Query: 597 DDFNSTL*NLGRDRKSLEERGLL---WTEAGVVAGMTTDNGAMAPGRAGAWTLFSNSLSR 427
D+ STL G+D S+ LL WT A MTT + APG +G + N L R
Sbjct: 35 DELQSTLGEPGKDFGSMNMDELLKNIWTAEDTQAFMTTTSSVAAPGPSG-FVPGGNGLQR 93
Query: 426 T-STRSPRVNTKPTL 385
S PR ++ T+
Sbjct: 94 QGSLTLPRTLSQKTV 108
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 344 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 442
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At3g07970.1 68416.m00974 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase precursor [Cucumis
melo] GI:3320462; contains PF00295: Glycosyl hydrolases
family 28 (polygalacturonases); contains non-consensus
AA donor splice site at exon 2
Length = 439
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +3
Query: 468 VLVPLPHCQSSFPPQHRPRSREDLFLPGSFYPYQDFKGYY*NHQRCTHLEAR 623
+L LP C SS+P H R+DLF+ + Y + + + ++ R +HL+ R
Sbjct: 12 LLTFLPSCFSSYPFNH----RDDLFMSSNVYYETNRQHQHGHNTRNSHLKNR 59
>At3g17280.1 68416.m02209 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 386
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = -2
Query: 352 WIVVQVVFDGFAHHCVFSHEHDTGAT*RDTDLLICCEPTLSAPTMKHFGYSSKSWMIL 179
WI+ + +D + + + D ++ +L CC+ P + + +SS SW +L
Sbjct: 128 WIIPRTRYDSDDIYALGCGD-DKSSSLHSYKILRCCDDNQKKPVSEIYDFSSSSWRVL 184
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -3
Query: 495 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 382
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 354 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 458
P R HT+R SC ETS +VT+ K++
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase BGQ60 precursor GB:A57512
[Hordeum vulgare]; similar to beta-mannosidase enzyme
(GI:17226270) [Lycopersicon esculentum]
Length = 512
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -3
Query: 534 LLWTEAGVVAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNT 397
+ + E VVA + DNG APGR F N S P + T
Sbjct: 201 MTFNEPRVVAALGYDNGIFAPGRCS--KAFGNCTEGNSATEPYIVT 244
>At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 809
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 46 KAILNLSRTEVVRFVLSLNFIEVP 117
+AI NLSR EV+R S+N E+P
Sbjct: 691 EAIGNLSRLEVLRLCSSMNLSELP 714
>At3g19560.1 68416.m02480 F-box family protein contains weak hit to
Pfam PF00646: F-box domain;; contains weak hit to
TIGRFAM TIGR01640 : F-box protein interaction domain
Length = 356
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/83 (22%), Positives = 39/83 (46%)
Frame = -2
Query: 400 HEANVALDVWQQFLEGWIVVQVVFDGFAHHCVFSHEHDTGAT*RDTDLLICCEPTLSAPT 221
+E N L VW +L +Q + D F + + +D ++ +L+ P
Sbjct: 109 NEDNTRLVVWNPYLAQTRCIQPI-DKFYIYDWYCLGYDKD---KNHKILVVYSPMFGRIE 164
Query: 220 MKHFGYSSKSWMILTK*LDFQVA 152
+ + + SKSW++L+ D+Q++
Sbjct: 165 YEIYSFLSKSWIVLSFPTDWQIS 187
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,808,804
Number of Sequences: 28952
Number of extensions: 364440
Number of successful extensions: 1093
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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