Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40364
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    27   2.1  
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    26   3.6  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    25   6.3  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   6.3  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   8.3  

>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 297 DVDHNYWKRYFVETISDDTAACMDNFRKVQISCSRSNFKI 416
           D  H  W+  F+E I +  A   D+  K+ I+  RS F I
Sbjct: 224 DAAHAVWRNIFIEPIVNRLAKYFDSSYKLTINDVRSLFYI 263


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 168 LNLMKGFIIIHNVKEH 215
           +NL K FI + NVKEH
Sbjct: 39  MNLKKAFIFLDNVKEH 54


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 386 LYFTKVI-HACGCVVRNRFHEISLPVIMIYVERNSK 282
           LYF +V+   C  V  + +H   L   ++ VERNSK
Sbjct: 219 LYFLEVLKQICSVVYVDSYHSNRLLSRILLVERNSK 254


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 369 YPCMRLCRPKSFPRNISSSNYDLRREE*QIRPTVSTFQKLTNVVHSESSDLRAL 208
           +  ++LC PK    +I++    L  +    R + S  Q+L +V+  +  D R L
Sbjct: 172 FNAVQLCSPKKSKDDITTPKKRLMEDTYSPRESPSKIQRLQDVLLKQLQDTRLL 225


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 348 RPKSFPRNISSSNYDL 301
           RP   P N+S SNYD+
Sbjct: 23  RPTMLPENLSLSNYDM 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,151
Number of Sequences: 5004
Number of extensions: 42957
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)