Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40364
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548,771...    28   6.5  

>01_01_0977 -
           7717808-7717837,7718227-7718327,7718449-7718548,
           7718706-7718822,7718913-7718990,7719980-7720058,
           7720184-7720249,7720373-7720441,7720890-7721188
          Length = 312

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 476 VVKFYIKCLHYLKISRFNILNLKIAT*ARYLYFTKVIH 363
           +  F+    ++L +  FNILN KI     Y YF  VIH
Sbjct: 115 ITGFFFFMWYFLNVI-FNILNKKIYNYFPYPYFVSVIH 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,969,308
Number of Sequences: 37544
Number of extensions: 226807
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)