Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40362
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O77320 Cluster: Putative uncharacterized protein MAL3P3...    34   3.3  
UniRef50_O61895 Cluster: Serpentine receptor, class x protein 59...    33   9.9  

>UniRef50_O77320 Cluster: Putative uncharacterized protein MAL3P3.3;
            n=3; Plasmodium|Rep: Putative uncharacterized protein
            MAL3P3.3 - Plasmodium falciparum (isolate 3D7)
          Length = 3724

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = +2

Query: 353  IFIYFVFVFLLSYSFEFKLKYCSSYSIKTNSAC*IQNFSV 472
            I+I +VF++LL Y F FK+ Y   Y  KTN    I+NFS+
Sbjct: 2637 IYIKYVFIYLLKYIFLFKI-YKYDYKKKTNID--IKNFSI 2673


>UniRef50_O61895 Cluster: Serpentine receptor, class x protein 59;
           n=1; Caenorhabditis elegans|Rep: Serpentine receptor,
           class x protein 59 - Caenorhabditis elegans
          Length = 308

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 341 RNSNIFIYFVFVFLLSYSFEFKLKYCS-SYSIKT 439
           RN+ I I+ +F+  L +SF F    CS  Y++KT
Sbjct: 120 RNTKIIIFLIFILTLGFSFSFYEVLCSLEYNLKT 153


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,839,326
Number of Sequences: 1657284
Number of extensions: 9883320
Number of successful extensions: 18392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18383
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)