Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40361
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288... 30 0.81
01_05_0746 + 24856362-24856710,24856799-24856986 30 0.81
06_03_0516 + 21661696-21662490 29 1.4
10_01_0346 - 3828511-3828635,3829124-3829154,3829368-3830555 28 4.3
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 27 5.7
11_01_0410 - 3111899-3112513,3112907-3112962,3113884-3114355 27 7.5
05_01_0137 + 917533-917814,918080-918352 27 7.5
04_03_0508 + 16643416-16643530,16643939-16644094,16644244-166444... 27 7.5
02_05_0446 - 29091389-29091559,29091722-29091774,29091945-290923... 27 7.5
05_01_0476 - 3896314-3898725 27 10.0
>08_02_1267 +
25728324-25728407,25728436-25728502,25728753-25728828,
25729388-25729450,25729640-25729896,25731299-25731440,
25731524-25732017,25732398-25732536,25733805-25733876,
25733960-25734040,25734677-25734843,25734942-25735147,
25735301-25735427,25735515-25735639
Length = 699
Score = 30.3 bits (65), Expect = 0.81
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -2
Query: 392 VDGGAEAAVLRVL----HQLQHRPSASAGTFTAGTLEPTPSNQNHVCQFITQAQSGP 234
+D G EA + ++L HQ + G+ G+ PS+ +C F Q S P
Sbjct: 1 MDTGVEAVLRKILAFHSHQFSQETKITRGSLPQGSTIVPPSHSRSICSFGAQESSEP 57
>01_05_0746 + 24856362-24856710,24856799-24856986
Length = 178
Score = 30.3 bits (65), Expect = 0.81
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 340 C*SWWRTRSTAASAPPSTWTPLCSSTTCTGPCL 438
C WWR A + WT + + + T PCL
Sbjct: 60 CPCWWRREGDAGGVTVTPWTAMHEARSDTWPCL 92
>06_03_0516 + 21661696-21662490
Length = 264
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 346 SWWRTRSTAASAPPSTWTPLCSSTTCTGPCL 438
+WWRT T A S W CSS C P L
Sbjct: 191 TWWRTSRTGAGGRCSGWRATCSS--CRRPQL 219
>10_01_0346 - 3828511-3828635,3829124-3829154,3829368-3830555
Length = 447
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 107 EQLIPTLCNLLDNH*FYSKLFLFNFITRFAYA 202
+ L+P LC +LD H FL N FAYA
Sbjct: 175 KDLLPLLCPILDFHARTGSPFLVNAYPYFAYA 206
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 296 EPTPSNQNHVCQFITQAQSGPPLGI 222
E TP Q+ CQF+T A PP G+
Sbjct: 1684 EFTPEQQHAFCQFVTGAPRLPPGGL 1708
>11_01_0410 - 3111899-3112513,3112907-3112962,3113884-3114355
Length = 380
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = -2
Query: 464 LIIANRV*TRHGPVHVVELQSGVQVDGGAEAAVLRVLHQLQHRPSASAGTFTAGTL 297
+ + N + T GPV V V+ + +L ++QHR + +A F G +
Sbjct: 225 ITLTNTINTSLGPVEVTYAVLTDAVEATVQVKLLHASRRIQHRHAVAATIFVYGDI 280
>05_01_0137 + 917533-917814,918080-918352
Length = 184
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 355 RTRSTAASAPPSTWTPLCSSTTCTGP 432
R + AASA P+T +P ++TT T P
Sbjct: 44 RQNAAAASASPTTSSPAPTTTTTTSP 69
>04_03_0508 +
16643416-16643530,16643939-16644094,16644244-16644405,
16644964-16645121,16645241-16645294,16645950-16646105,
16646241-16646582
Length = 380
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -2
Query: 353 HQLQHRPSASAGTFTAGTLEPT--PSNQNHV-CQFIT 252
H+LQ + S +FT G+ E T PS +NH+ C+ +T
Sbjct: 217 HRLQLKKKLSKASFTKGSNEDTSNPSAKNHLTCRTMT 253
>02_05_0446 -
29091389-29091559,29091722-29091774,29091945-29092373,
29093411-29094191
Length = 477
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 376 SAPPSTWTPLCSSTTCTGPCLV*TL 450
S+ P TW+P + GPCLV TL
Sbjct: 75 SSFPGTWSPYLINHKRRGPCLVKTL 99
>05_01_0476 - 3896314-3898725
Length = 803
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 137 LDNH*FYSKLFLFNFITRFAYAIR*GTRRFLTEVHSA 247
LD H F SK + N+ TR+ AI G R L+ +H +
Sbjct: 591 LDAHLFQSKATILNWTTRYNLAI--GVARGLSYLHQS 625
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,206,406
Number of Sequences: 37544
Number of extensions: 156249
Number of successful extensions: 421
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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