Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40361
         (468 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    26   0.57 
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    23   5.3  
AY341184-1|AAR13748.1|  187|Anopheles gambiae GNBP A1 protein.         23   7.0  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    23   7.0  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    23   7.0  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           22   9.3  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    22   9.3  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    22   9.3  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 26.2 bits (55), Expect = 0.57
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 440 TRHGPVHVVELQSGVQVDGGAEAAVLRVLHQLQHRP 333
           TR  P+ + ELQ   Q +GG  A ++ +     H P
Sbjct: 687 TRSPPIELHELQQQQQQNGGPTATIMMISTAGPHHP 722


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 338 RPSASAGTFTAGTLEPTPSNQNH 270
           +P   AGT +AGT   T S+  +
Sbjct: 682 KPDVGAGTASAGTTNSTSSSSGY 704


>AY341184-1|AAR13748.1|  187|Anopheles gambiae GNBP A1 protein.
          Length = 187

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 355 RTRSTAASAPPSTWTPLCSSTTCTGPC 435
           RT++T A    +T T +  +TT   PC
Sbjct: 116 RTKATVAPKSTTTTTTVKPTTTTPPPC 142


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -2

Query: 347 LQHRPSASAGTFTAGTLEPTPSNQNHV 267
           +  +P+AS+ T ++ + +P+P  Q  +
Sbjct: 4   ISQQPTASSSTTSSSSSKPSPQQQQQL 30


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -2

Query: 347 LQHRPSASAGTFTAGTLEPTPSNQNHV 267
           +  +P+AS+ T ++ + +P+P  Q  +
Sbjct: 4   ISQQPTASSSTTSSSSSKPSPQQQQQL 30


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +1

Query: 292 GSRVPAVKVPAEAEGRC*SWWRTRSTAASAPPSTWTPLCSST 417
           G  V AVK  AE      S W  +     AP  T   L SST
Sbjct: 735 GIDVNAVKAAAEEAVASVSHWMAQHHLQIAPEKTECVLISST 776


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = -1

Query: 297 GTHAVQSEPCLSIYHTSAEWTSV 229
           G H+ +++PCL + +    W+ +
Sbjct: 599 GFHSSEADPCLFVKNKRDRWSFI 621


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1209

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +3

Query: 369  RRLRATIDLDAALQL-YNV 422
            R+ RATID+D A+ L +NV
Sbjct: 1111 RKKRATIDIDIAVTLDHNV 1129


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 358,632
Number of Sequences: 2352
Number of extensions: 6156
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 40820256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)