Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40361
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   3.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.7  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/40 (25%), Positives = 16/40 (40%)
 Frame = +1

Query: 283 DGVGSRVPAVKVPAEAEGRC*SWWRTRSTAASAPPSTWTP 402
           DG+   +P   +P  ++      W+    A S PP    P
Sbjct: 362 DGMIEVIPLSAIPEPSKNPAMGHWQMSCVACSPPPRQTPP 401


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 129 HKVGMSCSLRAFQYCNNC 76
           H++ + CSL  F    NC
Sbjct: 78  HRINLKCSLVEFSENKNC 95


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -2

Query: 347 LQHRPSASAGTFTAGTLEPTPSNQNHVC 264
           L + PSA        + +  P  Q HVC
Sbjct: 515 LVYEPSACRPRHEIRSTDVIPGTQEHVC 542


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,751
Number of Sequences: 438
Number of extensions: 1577
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)