Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40360
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    28   1.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.0  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    26   4.6  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    26   6.1  
SPCC622.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        26   6.1  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    26   6.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.0  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   8.0  

>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 204 VTLICCSCSIIKLLFSSSMCVLSTSSINSLTCIVITLVALHV 79
           + LI C  S +  LF S    L+ SS+ SLT +  +L  LH+
Sbjct: 269 IELITCKFSKLNSLFLSKCIGLTDSSLLSLTKLSQSLTTLHL 310


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = -2

Query: 285  HLATVV*NSYSIDFDSLKFIFSKSIG*VTLICCSCSIIKLLFSSSMCVLSTSSI 124
            HL T   N+ +  FD+ + IFS S G   L   S S+ K+  SS    LS+SSI
Sbjct: 3739 HLPT---NTLASTFDNSQSIFSSSSGVPGLSTKSSSLGKIGSSSISLTLSSSSI 3789


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 322 KDSQINLTPILTKPWRLYPQQKFTLTITCRPKFLGKTREHIKILFKGFQ 468
           +DS+I+L   L+     YP +K TL      K   +   H+  L K FQ
Sbjct: 186 EDSEISLMEGLSSIENGYPDEKETLAALDNVKLSDENAAHLGYLVKYFQ 234


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 265 LNNSGQMHYINKWIVLNKKKDSQINLTPILTKPWRLYPQQKFTLT 399
           LN +  +HY NK  V+N     ++N + I  + +  YPQ  F ++
Sbjct: 162 LNGTDMIHYYNKTYVIN-YSGLKLNSSAINKRSY-FYPQDSFLVS 204


>SPCC622.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 574 ISFIFVMLSCTVFLLCGAFLFK 509
           +SFI  ++SC +F+L   F+FK
Sbjct: 45  MSFISFIVSCRLFILVFTFIFK 66


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +2

Query: 83  WRATKVITIQVSELIEDV--DNTHIDEENNSLIIEQEQ 190
           W+  +VI+++ + LI D+  DN  I+E+  +  +E+ +
Sbjct: 61  WQPMEVISLEPTHLINDIDDDNEIIEEKKETEKVEESE 98


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 186 SCSIIK-LLFSSSMCVLSTSSINSLTCIVITLVALHVHNP*LLSI 55
           +CS I+ LL  + +  +S SS +    ++IT ++ ++ N  LLSI
Sbjct: 415 TCSQIEELLLQAELANISASSFSLQLMVIITAISDNLTNDDLLSI 459


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 500 FTT*ILTYLSI*NPLNRIFICSLVL 426
           FT+ ILTYL I N   +  +CS+ L
Sbjct: 434 FTSTILTYLVIDNDQRKYLLCSIPL 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,747
Number of Sequences: 5004
Number of extensions: 61053
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)