Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40360
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.53 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +2

Query: 11  DGSVPQKGNNVMLEAIESNQGLCTWRATKVITIQVSELIEDVD---NTHIDEENNSLIIE 181
           D SVP   +NV + +++S++   +W A        S+L+E  +       D+  N+ +I 
Sbjct: 415 DASVPSLVSNVRITSVKSSELSISWDAPITEIGGDSDLVERYEVRCYPRYDDATNATVI- 473

Query: 182 QEQQISVT 205
           Q  ++S T
Sbjct: 474 QTSELSAT 481


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 29  KGNNVMLEAIESNQGLCTWRATKVIT 106
           +G+  +L+   SN     W AT VIT
Sbjct: 763 QGSQGLLQCATSNYSTTRWPATSVIT 788


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 628 GGFNGLTPGMNALLFSDIISFIFVMLSCTVFLLCGAFLFK 509
           GG  GL   +N     DI+S I  +L   V +  G FLF+
Sbjct: 268 GGLVGLGFSLNGPDRIDILSQINGILGSLVAITGGCFLFR 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,890
Number of Sequences: 438
Number of extensions: 4453
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)