Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40359
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    40   3e-05
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.3  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 26/97 (26%), Positives = 50/97 (51%)
 Frame = +3

Query: 234 SQ*NKTVVVVADMNNESDVENIIKKTVDNYHQLDVLVNNAGVLESGTIETTSLAQYDRIM 413
           S+  K V +  D++N++D+  +I+    N   +D+L+NNA +    T++   +  + +I 
Sbjct: 53  SKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIF 112

Query: 414 NTNVRGPYYLTMLAIPHLIKTKGNIVNVSSVTV*DLS 524
           + N+ G     +  +  L+K KG I N   V + D S
Sbjct: 113 DINLLG-LTCMIQEVLKLMKKKG-INNGIIVNINDAS 147



 Score = 25.8 bits (54), Expect = 0.39
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +1

Query: 88  NKVVIITGASSGIGAETAYEFAKLNAKLVLTGRKKENLDNVASDCESRSPSKIKPL 255
           ++V ++TGA+SGIG            K++    + + +  +  + +S+ P K+ PL
Sbjct: 7   DEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSK-PGKLVPL 61


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 357 VLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKT--KGNIVNVS 500
           VL+SG +  T      ++   ++     L  + IPH + T  KG +V+++
Sbjct: 142 VLDSGLVNNTQPMCSPKLFAFDLNTSQLLKQVEIPHDVATTGKGELVSLT 191


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 462 AELPTSS-NNKVREH*CSLFYRIEPKMLFLWYQIPKHQHYLQAHPIDD 322
           +ELP  S NN      C   Y  +   L  W Q+ KH ++++   ++D
Sbjct: 94  SELPWGSCNNYWNTKNCVNPY--DRDSLSCWLQMTKHHNFIKVCSVND 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,387
Number of Sequences: 438
Number of extensions: 3899
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)