Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40357
         (818 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2N6D7 Cluster: O-antigen translocase; n=1; Erythrobact...    35   2.1  
UniRef50_Q22Z15 Cluster: Zinc finger domain, LSD1 subclass famil...    33   6.6  
UniRef50_Q22Z14 Cluster: Zinc finger domain, LSD1 subclass famil...    33   8.7  

>UniRef50_Q2N6D7 Cluster: O-antigen translocase; n=1; Erythrobacter
           litoralis HTCC2594|Rep: O-antigen translocase -
           Erythrobacter litoralis (strain HTCC2594)
          Length = 432

 Score = 35.1 bits (77), Expect = 2.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 408 FHQSTTKNC-IQRLERNKHFKTLNSLLALCFSSV--LVLLDPSIFVRFFGDRWRYS 566
           + Q+ T+    QR  R    KTL++L AL    +  L+++ P +F   FGD WR S
Sbjct: 285 YRQNATETYRAQRSFRALFLKTLSALTALVILPIAALIIIAPDLFAFIFGDEWRVS 340


>UniRef50_Q22Z15 Cluster: Zinc finger domain, LSD1 subclass family
            protein; n=3; Tetrahymena thermophila SB210|Rep: Zinc
            finger domain, LSD1 subclass family protein - Tetrahymena
            thermophila SB210
          Length = 1669

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +3

Query: 408  FHQSTTKNCIQRLERNKHFKTLNSLLALCFSSVLVLLDPSIFVRFFGDRWRYSYRSNIII 587
            F+Q  +K C+ +   N+   T N   +LC SS      PS           Y Y++  I+
Sbjct: 872  FYQQGSKTCVTQCNSNQFKNTANQTCSLCDSSCSTCQGPSYTNCLSCTGNTYLYQNQCIL 931

Query: 588  TYPCNRY 608
              P N Y
Sbjct: 932  NCPSNYY 938


>UniRef50_Q22Z14 Cluster: Zinc finger domain, LSD1 subclass family
           protein; n=1; Tetrahymena thermophila SB210|Rep: Zinc
           finger domain, LSD1 subclass family protein -
           Tetrahymena thermophila SB210
          Length = 1494

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +3

Query: 408 FHQSTTKNCIQRLERNKHFKTLNSLLALCFSSVLVLLDPSIFVRFFGDRWRYSYRSNIII 587
           F+Q  +K C+ +   N+   T N   +LC SS      PS           Y Y++  I+
Sbjct: 754 FYQQGSKTCVTQCNSNQFKNTANQTCSLCDSSCNTCSGPSNINCLSCTGNTYLYQNQCIL 813

Query: 588 TYPCNRY 608
             P N Y
Sbjct: 814 NCPSNYY 820


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 814,686,896
Number of Sequences: 1657284
Number of extensions: 16978917
Number of successful extensions: 35620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35614
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 71200899835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)