Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40357
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.6  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   3.4  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   4.5  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 420 TTKNCIQRLERNKHFKTLNS-LLALC 494
           +TK  ++R +  +HF+ LNS + ALC
Sbjct: 382 STKLTLKRHKEQQHFQPLNSAVCALC 407


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 320 LVFVFWKCSNTPCVLCLHYCYALGFG 397
           +VF+F KCS  P +      Y LG G
Sbjct: 15  IVFLFDKCSGYPSIRQGTTSYCLGCG 40


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
          isomerase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 58 IVSIFTTYLRNIYPTN 11
          + SI+ TY +NI P N
Sbjct: 42 VPSIYLTYAKNILPNN 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,792
Number of Sequences: 438
Number of extensions: 5929
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)