Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40356
(668 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC030618-1|AAH30618.1| 589|Homo sapiens hypothetical protein LO... 49 1e-05
DQ469310-1|ABF13334.1| 386|Homo sapiens RUVBL1-FK protein. 33 0.70
Y18418-1|CAB46271.1| 456|Homo sapiens erythrocyte cytosolic pro... 33 0.92
BT007057-1|AAP35706.1| 456|Homo sapiens RuvB-like 1 (E. coli) p... 33 0.92
BC012886-1|AAH12886.1| 456|Homo sapiens RuvB-like 1 (E. coli) p... 33 0.92
BC002993-1|AAH02993.1| 456|Homo sapiens RuvB-like 1 (E. coli) p... 33 0.92
AK222575-1|BAD96295.1| 456|Homo sapiens TATA binding protein in... 33 0.92
AK222563-1|BAD96283.1| 456|Homo sapiens TATA binding protein in... 33 0.92
AJ010058-1|CAA08986.1| 456|Homo sapiens Nuclear matrix protein ... 33 0.92
AF380344-1|AAM45570.1| 456|Homo sapiens pontin 52 protein. 33 0.92
AF099084-1|AAD04427.1| 456|Homo sapiens Pontin52 protein. 33 0.92
AF070735-1|AAC77819.1| 456|Homo sapiens RuvB-like protein RUVBL... 33 0.92
AB012122-1|BAA28169.1| 456|Homo sapiens TIP49 protein. 33 0.92
BC063561-1|AAH63561.1| 552|Homo sapiens hypothetical protein FL... 33 1.2
AK026315-1|BAB15442.1| 506|Homo sapiens protein ( Homo sapiens ... 33 1.2
AK097297-1|BAC04995.1| 261|Homo sapiens protein ( Homo sapiens ... 30 6.5
>BC030618-1|AAH30618.1| 589|Homo sapiens hypothetical protein
LOC196463 protein.
Length = 589
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/69 (36%), Positives = 38/69 (55%)
Frame = +1
Query: 1 RILKRYKLNYHKTSKEDSESVPGTSIDFSSYPGSITSQDEFYLVKGNKHRMAVAGTALRN 180
R++K+Y L + + D VPG + FSSYPG+I S D+FY++ + T + N
Sbjct: 272 RVIKKYWLQFREGPWGDYPLVPGNKLVFSSYPGTIFSCDDFYILGSG---LVTLETTIGN 328
Query: 181 YNNKLWQEV 207
N LW+ V
Sbjct: 329 KNPALWKYV 337
Score = 44.0 bits (99), Expect = 5e-04
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 512 ADISDAFFEKGYWATYGLPFFKNVAEKTHINKMEALHGKIFSETESPRAVIF 667
AD + ++K YWA+Y +P F+ V + + + A +G FS SPRA IF
Sbjct: 411 ADKTSELYQKTYWASYNIPSFETVFNASGLQALVAQYGDWFSYDGSPRAQIF 462
Score = 35.1 bits (77), Expect = 0.23
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 231 WTSYNCCEHLATNVSSWGHIIAKNNSGSASKQWLIVDLNRF 353
W LA++ ++W I + NSG+ + QW+IVD F
Sbjct: 346 WVRNIVANRLASDGATWADIFKRFNSGTYNNQWMIVDYKAF 386
>DQ469310-1|ABF13334.1| 386|Homo sapiens RUVBL1-FK protein.
Length = 386
Score = 33.5 bits (73), Expect = 0.70
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 628 LAVQCLHFVDMRFFSYVFEERQSVRSPITFFKEGIRNIRRCVSPGTCSTNSTRPLP*LLL 449
L V +H +D+ F+Y+ +S +PI F N CV GT S +P LL
Sbjct: 299 LFVDEVHMLDIECFTYLHRALESSIAPIVIFAS---NRGNCVIRGTEDITSPHGIPLPLL 355
Query: 448 DRYIVCFT 425
DR ++ T
Sbjct: 356 DRVMIIRT 363
>Y18418-1|CAB46271.1| 456|Homo sapiens erythrocyte cytosolic
protein of 54 kDa, ECP-54 protein.
Length = 456
Score = 33.1 bits (72), Expect = 0.92
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 628 LAVQCLHFVDMRFFSYVFEERQSVRSPITFFKEGIRNIRRCVSPGTCSTNSTRPLP*LLL 449
L V +H +D+ F+Y+ +S +PI F N CV GT S +P LL
Sbjct: 299 LFVDEVHMLDIECFTYLHRALESSIAPIVIFAS---NRGNCVIRGTEDITSPHGIPLDLL 355
Query: 448 DRYIVCFT 425
DR ++ T
Sbjct: 356 DRVMIIRT 363
>BT007057-1|AAP35706.1| 456|Homo sapiens RuvB-like 1 (E. coli)
protein.
Length = 456
Score = 33.1 bits (72), Expect = 0.92
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 628 LAVQCLHFVDMRFFSYVFEERQSVRSPITFFKEGIRNIRRCVSPGTCSTNSTRPLP*LLL 449
L V +H +D+ F+Y+ +S +PI F N CV GT S +P LL
Sbjct: 299 LFVDEVHMLDIECFTYLHRALESSIAPIVIFAS---NRGNCVIRGTEDITSPHGIPLDLL 355
Query: 448 DRYIVCFT 425
DR ++ T
Sbjct: 356 DRVMIIRT 363
>BC012886-1|AAH12886.1| 456|Homo sapiens RuvB-like 1 (E. coli)
protein.
Length = 456
Score = 33.1 bits (72), Expect = 0.92
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 628 LAVQCLHFVDMRFFSYVFEERQSVRSPITFFKEGIRNIRRCVSPGTCSTNSTRPLP*LLL 449
L V +H +D+ F+Y+ +S +PI F N CV GT S +P LL
Sbjct: 299 LFVDEVHMLDIECFTYLHRALESSIAPIVIFAS---NRGNCVIRGTEDITSPHGIPLDLL 355
Query: 448 DRYIVCFT 425
DR ++ T
Sbjct: 356 DRVMIIRT 363
>BC002993-1|AAH02993.1| 456|Homo sapiens RuvB-like 1 (E. coli)
protein.
Length = 456
Score = 33.1 bits (72), Expect = 0.92
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 628 LAVQCLHFVDMRFFSYVFEERQSVRSPITFFKEGIRNIRRCVSPGTCSTNSTRPLP*LLL 449
L V +H +D+ F+Y+ +S +PI F N CV GT S +P LL
Sbjct: 299 LFVDEVHMLDIECFTYLHRALESSIAPIVIFAS---NRGNCVIRGTEDITSPHGIPLDLL 355
Query: 448 DRYIVCFT 425
DR ++ T
Sbjct: 356 DRVMIIRT 363
>AK222575-1|BAD96295.1| 456|Homo sapiens TATA binding protein
interacting protein 49 kDa variant protein.
Length = 456
Score = 33.1 bits (72), Expect = 0.92
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 628 LAVQCLHFVDMRFFSYVFEERQSVRSPITFFKEGIRNIRRCVSPGTCSTNSTRPLP*LLL 449
L V +H +D+ F+Y+ +S +PI F N CV GT S +P LL
Sbjct: 299 LFVDEVHMLDIECFTYLHRALESSIAPIVIFAS---NRGNCVIRGTEDITSPHGIPLDLL 355
Query: 448 DRYIVCFT 425
DR ++ T
Sbjct: 356 DRVMIIRT 363
>AK222563-1|BAD96283.1| 456|Homo sapiens TATA binding protein
interacting protein 49 kDa variant protein.
Length = 456
Score = 33.1 bits (72), Expect = 0.92
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 628 LAVQCLHFVDMRFFSYVFEERQSVRSPITFFKEGIRNIRRCVSPGTCSTNSTRPLP*LLL 449
L V +H +D+ F+Y+ +S +PI F N CV GT S +P LL
Sbjct: 299 LFVDEVHMLDIECFTYLHRALESSIAPIVIFAS---NRGNCVIRGTEDITSPHGIPLDLL 355
Query: 448 DRYIVCFT 425
DR ++ T
Sbjct: 356 DRVMIIRT 363
>AJ010058-1|CAA08986.1| 456|Homo sapiens Nuclear matrix protein
NMP238 protein.
Length = 456
Score = 33.1 bits (72), Expect = 0.92
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 628 LAVQCLHFVDMRFFSYVFEERQSVRSPITFFKEGIRNIRRCVSPGTCSTNSTRPLP*LLL 449
L V +H +D+ F+Y+ +S +PI F N CV GT S +P LL
Sbjct: 299 LFVDEVHMLDIECFTYLHRALESSIAPIVIFAS---NRGNCVIRGTEDITSPHGIPLDLL 355
Query: 448 DRYIVCFT 425
DR ++ T
Sbjct: 356 DRVMIIRT 363
>AF380344-1|AAM45570.1| 456|Homo sapiens pontin 52 protein.
Length = 456
Score = 33.1 bits (72), Expect = 0.92
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 628 LAVQCLHFVDMRFFSYVFEERQSVRSPITFFKEGIRNIRRCVSPGTCSTNSTRPLP*LLL 449
L V +H +D+ F+Y+ +S +PI F N CV GT S +P LL
Sbjct: 299 LFVDEVHMLDIECFTYLHRALESSIAPIVIFAS---NRGNCVIRGTEDITSPHGIPLDLL 355
Query: 448 DRYIVCFT 425
DR ++ T
Sbjct: 356 DRVMIIRT 363
>AF099084-1|AAD04427.1| 456|Homo sapiens Pontin52 protein.
Length = 456
Score = 33.1 bits (72), Expect = 0.92
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 628 LAVQCLHFVDMRFFSYVFEERQSVRSPITFFKEGIRNIRRCVSPGTCSTNSTRPLP*LLL 449
L V +H +D+ F+Y+ +S +PI F N CV GT S +P LL
Sbjct: 299 LFVDEVHMLDIECFTYLHRALESSIAPIVIFAS---NRGNCVIRGTEDITSPHGIPLDLL 355
Query: 448 DRYIVCFT 425
DR ++ T
Sbjct: 356 DRVMIIRT 363
>AF070735-1|AAC77819.1| 456|Homo sapiens RuvB-like protein RUVBL1
protein.
Length = 456
Score = 33.1 bits (72), Expect = 0.92
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 628 LAVQCLHFVDMRFFSYVFEERQSVRSPITFFKEGIRNIRRCVSPGTCSTNSTRPLP*LLL 449
L V +H +D+ F+Y+ +S +PI F N CV GT S +P LL
Sbjct: 299 LFVDEVHMLDIECFTYLHRALESSIAPIVIFAS---NRGNCVIRGTEDITSPHGIPLDLL 355
Query: 448 DRYIVCFT 425
DR ++ T
Sbjct: 356 DRVMIIRT 363
>AB012122-1|BAA28169.1| 456|Homo sapiens TIP49 protein.
Length = 456
Score = 33.1 bits (72), Expect = 0.92
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 628 LAVQCLHFVDMRFFSYVFEERQSVRSPITFFKEGIRNIRRCVSPGTCSTNSTRPLP*LLL 449
L V +H +D+ F+Y+ +S +PI F N CV GT S +P LL
Sbjct: 299 LFVDEVHMLDIECFTYLHRALESSIAPIVIFAS---NRGNCVIRGTEDITSPHGIPLDLL 355
Query: 448 DRYIVCFT 425
DR ++ T
Sbjct: 356 DRVMIIRT 363
>BC063561-1|AAH63561.1| 552|Homo sapiens hypothetical protein
FLJ22662 protein.
Length = 552
Score = 32.7 bits (71), Expect = 1.2
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = +1
Query: 1 RILKRYKLNYHKTSKEDSESVPGTSIDFSSYPGSITSQDEFYLVKGNKHRMAVAGTALRN 180
RI K + N K+ S S + FSSYPG + S D+FY++ + + T
Sbjct: 255 RIYKHWDFNI--IDKDTSSS----RLSFSSYPGFLESLDDFYILSSG---LILLQTTNSV 305
Query: 181 YNNKLWQEVNITEQVPAGPRITAANI 258
+N L ++V I E + + R+ AN+
Sbjct: 306 FNKTLLKQV-IPETLLSWQRVRVANM 330
>AK026315-1|BAB15442.1| 506|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22662 fis, clone HSI08080. ).
Length = 506
Score = 32.7 bits (71), Expect = 1.2
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = +1
Query: 1 RILKRYKLNYHKTSKEDSESVPGTSIDFSSYPGSITSQDEFYLVKGNKHRMAVAGTALRN 180
RI K + N K+ S S + FSSYPG + S D+FY++ + + T
Sbjct: 209 RIYKHWDFNI--IDKDTSSS----RLSFSSYPGFLESLDDFYILSSG---LILLQTTNSV 259
Query: 181 YNNKLWQEVNITEQVPAGPRITAANI 258
+N L ++V I E + + R+ AN+
Sbjct: 260 FNKTLLKQV-IPETLLSWQRVRVANM 284
>AK097297-1|BAC04995.1| 261|Homo sapiens protein ( Homo sapiens
cDNA FLJ39978 fis, clone SPLEN2029380. ).
Length = 261
Score = 30.3 bits (65), Expect = 6.5
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = -2
Query: 511 RCVSPGTCSTNSTRPLP*LLLDRYI-VCFTSFEISVTTSLCPCLCFSWCSERVSNLLRST 335
+ +S T S STR P LL Y+ +C T + SLCPC+ S C L
Sbjct: 9 KLISQVTGSRYSTRSSPLFLLCLYLGICLT-----FSVSLCPCIVLSACLSASLFLPPCC 63
Query: 334 ISHCFDADPELFL 296
+ H A +FL
Sbjct: 64 VFHYIVAFLSIFL 76
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,188,108
Number of Sequences: 237096
Number of extensions: 2460208
Number of successful extensions: 5456
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5440
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -