Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40355
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 30 0.28
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 29 0.50
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 28 1.1
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 28 1.1
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 28 1.5
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 28 1.5
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 27 2.0
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 27 3.5
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 26 4.6
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 4.6
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 26 4.6
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 6.1
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 6.1
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 30.3 bits (65), Expect = 0.28
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 446 FECSEGRIGRYTKDSEVYWGCRDSCIRLIRTEHIDDIKEDIPKLKNQMKDLTQSLTEAQD 625
F CS + Y DS+ Y+G + C L R H+++ K ++ + D
Sbjct: 4060 FTCSSWKEPCYFDDSDFYFGTKILCNILYRNVHLEEFSWGTFKDLLLNVVYGPKVSASSD 4119
Query: 626 KIKDEKLSKDL-AQSKTEVDS 685
I +K+ K L AQ KT++ S
Sbjct: 4120 FIALDKILKRLIAQFKTQISS 4140
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 29.5 bits (63), Expect = 0.50
Identities = 28/110 (25%), Positives = 46/110 (41%)
Frame = +2
Query: 383 CVQQFRILPAMRLLDVDIRTGFECSEGRIGRYTKDSEVYWGCRDSCIRLIRTEHIDDIKE 562
CV F P RL DVD CS + T ++ ++W +S R I + K
Sbjct: 364 CVYPFPNKP-YRLPDVDFEIFSHCSFESLTTVTTNTNIWWVWAES-----RCTEIPESKR 417
Query: 563 DIPKLKNQMKDLTQSLTEAQDKIKDEKLSKDLAQSKTEVDSIFGAICRAF 712
+ + D T L Q + + ++ + +K + + IFG I R+F
Sbjct: 418 TVFPNCTMLIDKTGRLIILQQTVPQKPVALTASSNKRK-NRIFGKIRRSF 466
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +3
Query: 336 MPRDQLIKDLGYITSAVCNSSEYFQQCAYLMSISEQDLSAAKEGLVDI 479
MP I+D+ Y+ ++VC+ Y+Q A+ ++ + ++L E +D+
Sbjct: 454 MPSTFTIEDMKYLANSVCSGPTYWQD-AFSLTDALKELKEEPEWCLDL 500
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/53 (24%), Positives = 30/53 (56%)
Frame = +2
Query: 542 HIDDIKEDIPKLKNQMKDLTQSLTEAQDKIKDEKLSKDLAQSKTEVDSIFGAI 700
++ + K + K + + LTE QD++KD ++ LA ++ + S++G++
Sbjct: 757 NVIEAKYKLEKHEMDANQVNARLTEVQDRLKD--ITDKLASAREDAMSLYGSV 807
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 533 RTEHIDDIKEDIPKLKNQMKDLTQSLTEAQDKIKDEKLSKDL 658
+T + ++ D KLK +KDL + D K E+L DL
Sbjct: 238 KTNVFNQLRADKKKLKKDLKDLVEEFQPILD--KGEELRSDL 277
>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 482
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 40 FATYNVLKTAEYASRDLDHPVSRRRLLDALRQL 138
+ +Y+ TA YAS ++ H SR ++ RQL
Sbjct: 4 YGSYSTPLTARYASAEMSHLFSREMRINTWRQL 36
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 136 VGVRHPEVVFCLLDDRDPDWHTRRS*AHYRWR 41
V +++PE +F L D RD W T + WR
Sbjct: 704 VFIKNPETLFALEDMRDKFWDTMATRIQRAWR 735
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 79 SRDLDHPVSRRRLLDALRQLNESINTLVRCCSPGPSSE 192
+ +L HP+SR L ALR+ +E I + RC G S E
Sbjct: 14 THELFHPLSRSPLT-ALRRRSEHIKQVYRCPISGKSVE 50
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = +2
Query: 521 IRLIRTEHIDDIKEDIPKLKNQMKDLTQSLTEAQDKIKDEKLSKDLAQSKTEV 679
+++ E ID + D + Q++ L + E + + +EKL+ + + KT++
Sbjct: 57 LQMTAKEIIDAFERDSTQRTLQIESLESKIGEQERDLNNEKLASETLREKTQL 109
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/57 (24%), Positives = 32/57 (56%)
Frame = +2
Query: 512 DSCIRLIRTEHIDDIKEDIPKLKNQMKDLTQSLTEAQDKIKDEKLSKDLAQSKTEVD 682
D + ++ + + +E +P+++ +MK++ + E Q + + KL KD+ SK + D
Sbjct: 250 DDFLEAVKAKVKEYEEEYVPEME-RMKEIQRQTKERQKEAQLSKLMKDMHVSKDKED 305
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 4.6
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = -1
Query: 631 DLVLGFSQRLRKIFHLILQLRYVFFDII---NMFGSNEAYARVATSPIDF*IFRISTNPS 461
+L+L S +L + IL V ++++ + S EA+ + + + ++S
Sbjct: 1004 ELLLQISSKLSSVAPKILNA--VLYNLVVSDDQISSQEAFENFEVK-MAYTVRQLSLKVF 1060
Query: 460 FAALKSCSDIDIK*AHCWKYSELLHTAEVM*PR 362
LKSCSD+D K Y+ ++TA V+ PR
Sbjct: 1061 LLFLKSCSDVDFK-----PYNVFIYTAFVV-PR 1087
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 557 KEDIPKLKNQMKDLTQSLTEAQDKIKDEKLSK 652
+ DI KLK Q+K L ++ +++ D K K
Sbjct: 208 RPDIEKLKEQLKSLGATIVITDEELMDRKTMK 239
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 530 IRTEHIDDIKEDIPKLKNQMKDLTQSLTEAQDKIKDEKLSKDLAQSKTEVDSIFGAICRA 709
++ E + + D P K K L S+ +A+D+ + SK +EVD F A R+
Sbjct: 137 VKQEPDSEEEIDSPTKKKSFKSLDTSIFQAEDQFRHPVSSKLENSELSEVDKPFIASRRS 196
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.8 bits (54), Expect = 6.1
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +3
Query: 213 STTADIYQPVPAPNCGLPYLHCVDAL--NNQKDVLSKLKNEEAMPRDQLIKDLGYITSAV 386
ST A IY P+ + +L C D L +N+K+++ + E AM + + I +
Sbjct: 1152 STLAGIYHPLARDLFNVSFLSCWDELTESNKKNLVKSI--ELAMNAPNISVE---ILQTL 1206
Query: 387 CNSSEYFQQCAYLMSISEQDLSA 455
N +EY ++ + + I + +SA
Sbjct: 1207 LNLAEYMEREDHTLPIPIKVISA 1229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,775
Number of Sequences: 5004
Number of extensions: 63863
Number of successful extensions: 232
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -