Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40354
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.33 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   4.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.4  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 658 LKFWYNKLTIN*A*TFTTDDILNCKNFANP 747
           L FW N  ++     F    +LNCKN+ +P
Sbjct: 12  LLFWQNSASLENDNEFGFSYLLNCKNYDHP 41


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 169 SNRNALLLHGRNRQSGGTHPRGLTRGPTTVITQIIILRVS 288
           +  NA+LL GR+++S    P G T      +  + I RVS
Sbjct: 366 TKENAMLLSGRSQKSTTGPPPGPTPAQKARMRALNIDRVS 405


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 275 IIICVITVVGPLVSPRGWVPPLCLFLP*SSNA 180
           +++    VVG  +S   W+ P  + +P S++A
Sbjct: 531 LVVYACNVVGSGLSHGNWIYPASMTIPGSNSA 562


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 228 ARTHKRSYHSNYANYNF 278
           A+ +KRS H+NY  + F
Sbjct: 579 AQVNKRSIHNNYPVHTF 595


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,819
Number of Sequences: 438
Number of extensions: 5260
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)