Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40353
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    30   0.41 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   3.8  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   5.0  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   8.8  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    25   8.8  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   8.8  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +1

Query: 481 TITETVYCRIQGSCLGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGGGT---QRL 651
           T  + V   + G  +GGG   A+   +RIA +D  T F +PE  +G       +    RL
Sbjct: 150 TYQKPVVALMNGITMGGGSGLAMHVPFRIACED--TMFAMPETGIGYFTDVAASFFFSRL 207

Query: 652 PGSHLHTY 675
           PG +  TY
Sbjct: 208 PG-YFGTY 214


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = -1

Query: 653 GNLCVPPPPGKSPNMTSGSPNPVLESFTAMRYLHARAVSNPP 528
           G    PPPP +S   T   P P+  S         RAVSNPP
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSS---------RAVSNPP 389


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 27/94 (28%), Positives = 39/94 (41%)
 Frame = +2

Query: 236 LRSHFGPPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIEN 415
           LRS  G PN     +N Q    +S I    ETN   E   I  G     +A + +S    
Sbjct: 276 LRSENGSPNPSAAVINEQENMNMSGIEEYDETNLLNELGRIRRGNQFQSLASSILSSGNL 335

Query: 416 CKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAYKA 517
             + +E VSL  + +    R   S  P+ +A+ A
Sbjct: 336 ENSDDEDVSLGPQTY----RFNSSFHPFRSAFSA 365


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 638 PPPPGKSPNMTSGSPNPVLESFTAMRYLHARAVSNPPPRQ 519
           P P G S  +   S  P   SF +  +L +   SN P ++
Sbjct: 140 PRPSGNSSRLDRNSSRPFTSSFHSAPFLSSYGSSNDPSQE 179


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 486 DCSILLNISCPLLDRLTTSSFVLQFSIMLISAPAMKHPGLPDIMTA 349
           D S LLN    +L+ L  +   ++    L   P M+H  + D+MTA
Sbjct: 499 DKSQLLNAYQAVLNCLQDNDLPVRIQAALALQPLMRHLEVHDVMTA 544


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 501 IYGFRDCSILLNISCPLL 448
           IYG++D ++ +   CPL+
Sbjct: 45  IYGYKDLNVTITYECPLM 62


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 647 LCVPPPPGKSPNMTSGSPNPVLESFTAMR 561
           L  P PP + P +T+ SPN ++ S   +R
Sbjct: 240 LTPPAPPVELPPVTTTSPNAIIRSVQWIR 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,212
Number of Sequences: 5004
Number of extensions: 62020
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)