Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40353
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.44 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 11/52 (21%), Positives = 29/52 (55%)
 Frame = +2

Query: 260  NVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIEN 415
            +  +NS+  +  + ++++  +I TN+  + A  I GKP   +  +  S++++
Sbjct: 863  STSINSITVE-KDVINDVKTQITTNTPAKKATNIGGKPVAVVKSSAQSLLQS 913


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 254 PPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIIS 364
           PP + V  LNT  + +   I ++I  N+  E   +++
Sbjct: 149 PPQLLVFDLNTSQLLKQVKIPHDIAVNTTTEKGALVT 185


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 129 KILRSRKELFISGVHSRKYAV 191
           ++LR RKELFI+ V    Y +
Sbjct: 409 RLLRKRKELFIAIVCFVSYLI 429


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 129 KILRSRKELFISGVHSRKYAV 191
           ++LR RKELFI+ V    Y +
Sbjct: 462 RLLRKRKELFIAIVCFVSYLI 482


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 287 QVMEEVSNIVNEIETNSGIEAAVIISGKPG 376
           ++ +EVS+ + +I  N+   A V ISG  G
Sbjct: 169 EIKKEVSSYIKKIGYNTASVAFVPISGWHG 198


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 616 GLLPGGGGTQRLPGSHLHTYN 678
           GL+ GG   +RL    L TYN
Sbjct: 16  GLVNGGSHEKRLLNDLLDTYN 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,834
Number of Sequences: 438
Number of extensions: 4630
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)