Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40352
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 60 4e-10
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 59 6e-10
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 59 6e-10
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 58 1e-09
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 52 7e-08
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 30 0.40
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 27 2.1
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 26 4.9
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 6.5
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 59.7 bits (138), Expect = 4e-10
Identities = 28/57 (49%), Positives = 37/57 (64%)
Frame = +1
Query: 1 LIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQE 171
L ST + +N+D L KKGV I+N RGGLI + A+ SG+VGG A+DV+E E
Sbjct: 208 LTPSTTHIVNSDSLALMKKGVTIVNTSRGGLIDTKALVDAIDSGQVGGCAIDVYEGE 264
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 59.3 bits (137), Expect = 6e-10
Identities = 31/79 (39%), Positives = 44/79 (55%)
Frame = +1
Query: 13 TRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVT 192
TR+ I ++ K+G+ I+N RG ++ E ++AL G V A LDVFE+EP P
Sbjct: 223 TRHIIGKPEFQKMKRGIVIVNTARGAVMDEAALVEALDEGIVYSAGLDVFEEEPKIHPGL 282
Query: 193 LEIIQQPAVIATPHLGAST 249
LE VI PHLG ++
Sbjct: 283 LE---NEKVILLPHLGTNS 298
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 59.3 bits (137), Expect = 6e-10
Identities = 34/83 (40%), Positives = 44/83 (53%)
Frame = +1
Query: 1 LIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPT 180
L +T + I+ ++ K GV IIN RG +I E F++A+KSGKV A LDVF EP
Sbjct: 224 LTPATHDLISTKEFEKMKDGVYIINTARGAIINEDAFIKAIKSGKVARAGLDVFLNEPTP 283
Query: 181 DPVTLEIIQQPAVIATPHLGAST 249
+ LE V PH G T
Sbjct: 284 NKFWLEC---DKVTIQPHCGVYT 303
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 58.4 bits (135), Expect = 1e-09
Identities = 26/57 (45%), Positives = 38/57 (66%)
Frame = +1
Query: 1 LIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQE 171
L T + ++ +L KKGVKIIN RGGL+ ++A++SG+VGG A+DV+E E
Sbjct: 208 LTPDTEHLVDEKLLASMKKGVKIINTSRGGLVDTKALVKAIESGQVGGCAMDVYEGE 264
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 52.4 bits (120), Expect = 7e-08
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Frame = +1
Query: 13 TRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPP----- 177
T+N I++ K+G +IN RG ++ + A KSGK+ GAA+DV+ EP
Sbjct: 261 TKNMISSKEFAAMKEGSYLINASRGTVVDIPALVDASKSGKIAGAAIDVYPSEPAGNGKD 320
Query: 178 --TDPV---TLEIIQQPAVIATPHLGASTK 252
D + T E+ +I TPH+G ST+
Sbjct: 321 KFVDSLNSWTSELTHCKNIILTPHIGGSTE 350
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 29.9 bits (64), Expect = 0.40
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -2
Query: 369 LTFTCSRHG*LRPAESGMFPASPGSRAAQQSPGQLSPELLSRGPQMWSGNYSRLLNN 199
L FT S + G+F G R A+ L P+++ P W GNY L +
Sbjct: 44 LNFTDSNSSNPPTSFFGVFDGHGGDRVAKYCRQHL-PDIIKSQPSFWKGNYDEALKS 99
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -2
Query: 339 LRPAESGMFPASPGSRAAQQSPGQLSPELLSRGPQMWSGNYSRLLN-NLQSDRIGRRLLL 163
L P+ S FP PGS+ Q +PG+ S + NY LL+ + S ++ + ++
Sbjct: 553 LHPSCSQTFPPYPGSQLLQATPGR---SFSSNAEALLPLNYITLLSKDSSSPKMLKDVIF 609
Query: 162 EHVQSSPAH 136
E +Q + ++
Sbjct: 610 ERLQCASSN 618
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 197 SKVTGSVGGSCSNTSRAAPPTFPDFRACKKSV 102
+K+TG+ GG C+ T +F+ CK+S+
Sbjct: 323 TKLTGAGGGGCTITLLTPECKEEEFKLCKESL 354
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 261 PELLSRGPQMWSGNYSRLLNNL 196
P L S+ PQ++ GNY RL +L
Sbjct: 630 PRLSSKLPQVFPGNYPRLQQSL 651
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,370
Number of Sequences: 5004
Number of extensions: 40004
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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