Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40352
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.2  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.2  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 49  CKKGVKIINVGRGGLIQETDFLQALKSGK 135
           CK+G  +   G G L    + L AL SGK
Sbjct: 387 CKEGPDVKAYGAGLLSAYGELLHALTSGK 415


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 251 RSSGESWPGDC*AAREP 301
           RS G +WPGD    + P
Sbjct: 914 RSPGRAWPGDSDIRQRP 930


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 279 SPGQLSPELLSRGP 238
           +PG LSPE+L + P
Sbjct: 75  TPGYLSPEVLKKEP 88


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 691 LLNTFTHQTNTY 656
           L+NT TH TN +
Sbjct: 33  LMNTMTHTTNAF 44


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 691 LLNTFTHQTNTY 656
           L+NT TH TN +
Sbjct: 32  LMNTMTHTTNAF 43


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 189 HFGDYSAACCNCHSTSG 239
           H+G+    C  CH T G
Sbjct: 254 HYGEKVYKCTLCHETFG 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,598
Number of Sequences: 438
Number of extensions: 3159
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)