Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40352
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17745.1 68414.m02196 D-3-phosphoglycerate dehydrogenase / 3-...    77   1e-14
At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase, put...    75   4e-14
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put...    73   2e-13
At1g79870.1 68414.m09330 oxidoreductase family protein contains ...    64   7e-11
At2g45630.2 68415.m05674 oxidoreductase family protein low simil...    63   2e-10
At1g12550.1 68414.m01455 oxidoreductase family protein similar t...    62   3e-10
At1g72190.1 68414.m08347 oxidoreductase family protein similar t...    57   1e-08
At5g14780.1 68418.m01734 formate dehydrogenase (FDH) identical t...    52   5e-07
At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependen...    45   5e-05
At1g01510.1 68414.m00067 C-terminal binding protein (ANGUSTIFOLI...    34   0.087
At4g28080.1 68417.m04027 expressed protein                             28   7.5  
At3g26750.1 68416.m03346 expressed protein                             28   7.5  
At3g25260.1 68416.m03155 proton-dependent oligopeptide transport...    28   7.5  

>At1g17745.1 68414.m02196 D-3-phosphoglycerate dehydrogenase /
           3-PGDH identical to SP|O04130
          Length = 624

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 41/84 (48%), Positives = 53/84 (63%)
 Frame = +1

Query: 1   LIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPT 180
           L  +T+   N +   + KKGV++INV RGG+I E   ++AL +G V  AALDVF +EPP+
Sbjct: 285 LTPATKKVFNDETFSKMKKGVRLINVARGGVIDEDALVRALDAGIVAQAALDVFCEEPPS 344

Query: 181 DPVTLEIIQQPAVIATPHLGASTK 252
               L  IQ   V  TPHLGASTK
Sbjct: 345 KDSRL--IQHENVTVTPHLGASTK 366


>At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to phosphoglycerate
           dehydrogenase, Arabidopsis thaliana, SP:O04130
          Length = 603

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 38/83 (45%), Positives = 52/83 (62%)
 Frame = +1

Query: 1   LIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPT 180
           L  +T   +N +   + KKGV+I+NV RGG+I E   ++AL +G V  AALDVF +EPP 
Sbjct: 264 LTPTTSKILNDETFAKMKKGVRIVNVARGGVIDEDALVRALDAGIVAQAALDVFTKEPPA 323

Query: 181 DPVTLEIIQQPAVIATPHLGAST 249
                +++Q   V  TPHLGAST
Sbjct: 324 K--DSKLVQHERVTVTPHLGAST 344


>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to SP:O04130 from
           [Arabidopsis thaliana]
          Length = 588

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 40/83 (48%), Positives = 50/83 (60%)
 Frame = +1

Query: 1   LIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPT 180
           L  +T   +N       KKGV+I+NV RGG+I E   L+AL SG V  AALDVF  EPP 
Sbjct: 249 LTAATSKMMNDVTFAMMKKGVRIVNVARGGVIDEEALLRALDSGIVAQAALDVFTVEPPV 308

Query: 181 DPVTLEIIQQPAVIATPHLGAST 249
                +++   +V ATPHLGAST
Sbjct: 309 K--DNKLVLHESVTATPHLGAST 329


>At1g79870.1 68414.m09330 oxidoreductase family protein contains
           Pfam profile: PF02826 D-isomer specific 2-hydroxyacid
           dehydrogenase, NAD binding domain; similar to glyoxylate
           reductase from Thermococcus litoralis [gi:13515409]
          Length = 313

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
 Frame = +1

Query: 1   LIESTRNFINADVLKQC-KKGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPP 177
           L E TR+ ++  V+     KGV +IN+GRG  + E + ++AL  G++GGAALDVFEQEP 
Sbjct: 205 LTEQTRHIVDRQVMDALGAKGV-LINIGRGPHVDEQELIKALTEGRLGGAALDVFEQEP- 262

Query: 178 TDPVTLEIIQQPAVIATPHLGAST 249
              V  E+     V+  PH+G+ T
Sbjct: 263 --HVPEELFGLENVVLLPHVGSGT 284


>At2g45630.2 68415.m05674 oxidoreductase family protein low
           similarity to SP|P36234 Glycerate dehydrogenase (EC
           1.1.1.29) (NADH-dependent hydroxypyruvate reductase)
           {Hyphomicrobium methylovorum}; contains Pfam profile
           PF00389: D-isomer specific 2-hydroxyacid dehydrogenase,
           catalytic domain
          Length = 338

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 33/78 (42%), Positives = 45/78 (57%)
 Frame = +1

Query: 1   LIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPT 180
           L E T   IN DVL    K   I+NV RG +I E + ++ L+ G++GGA LDVFE EP  
Sbjct: 230 LNEKTLRLINKDVLSALGKRGVIVNVARGAIIDEEEMVRCLREGEIGGAGLDVFEDEP-- 287

Query: 181 DPVTLEIIQQPAVIATPH 234
             V  E+ +   V+ +PH
Sbjct: 288 -NVPKELFELDNVVFSPH 304


>At1g12550.1 68414.m01455 oxidoreductase family protein similar to
           glyoxylate reductase from Homo sapiens (gi:6002730);
           contains Pfam D-isomer specific 2-hydroxyacid
           dehydrogenase, NAD binding domain PF02826
          Length = 323

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 32/83 (38%), Positives = 47/83 (56%)
 Frame = +1

Query: 1   LIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPT 180
           L + T + +N +V++   K   +INVGRG LI E + ++ L  G +GGA LDVFE EP  
Sbjct: 213 LTDETHHIVNREVMELLGKDGVVINVGRGKLIDEKEMVKCLVDGVIGGAGLDVFENEP-- 270

Query: 181 DPVTLEIIQQPAVIATPHLGAST 249
             V  E+     V+ +PH   +T
Sbjct: 271 -AVPQELFGLDNVVLSPHFAVAT 292


>At1g72190.1 68414.m08347 oxidoreductase family protein similar to
           D-3-phosphoglycerate dehydrogenase from Arabidopsis
           thaliana [SP|O04130], glyoxylate reductase from Homo
           sapiens (gi:6002730); contains Pfam D-isomer specific
           2-hydroxyacid dehydrogenase, NAD binding domain PF02826
          Length = 373

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
 Frame = +1

Query: 1   LIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEP-- 174
           L + T   +N + +   KKG  ++N+ RGGLI      Q L+SG +GG  +DV   EP  
Sbjct: 262 LNKETAEIVNKEFICSMKKGALLVNIARGGLINYESAFQNLESGHLGGLGIDVAWSEPFD 321

Query: 175 PTDPVTLEIIQQPAVIATPHLGASTK 252
           P DP    I++   VI TPH+   T+
Sbjct: 322 PNDP----ILKFKNVIITPHVAGVTE 343


>At5g14780.1 68418.m01734 formate dehydrogenase (FDH) identical to
           GI:7677266
          Length = 384

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 27/83 (32%), Positives = 44/83 (53%)
 Frame = +1

Query: 1   LIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPT 180
           L E TR   N +++ + KKGV I+N  RG +++    + A++SG +GG + DV++ +P  
Sbjct: 263 LTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPA- 321

Query: 181 DPVTLEIIQQPAVIATPHLGAST 249
            P        P    TPH   +T
Sbjct: 322 -PKDHPWRYMPNQAMTPHTSGTT 343


>At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependent
           hydroxypyruvate reductase identical to hydroxypyruvate
           reductase (HPR) GB:D85339 [Arabidopsis thaliana] (Plant
           Cell Physiol 1997 Apr;38(4):449-55)
          Length = 386

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 25/84 (29%), Positives = 42/84 (50%)
 Frame = +1

Query: 1   LIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPT 180
           L ++T + +N + L   KK   ++N  RG +I E   ++ LK   +    LDVFE+EP  
Sbjct: 246 LDKTTYHLVNKERLAMMKKEAILVNCSRGPVIDEAALVEHLKENPMFRVGLDVFEEEPFM 305

Query: 181 DPVTLEIIQQPAVIATPHLGASTK 252
            P    +      I  PH+ +++K
Sbjct: 306 KP---GLADTKNAIVVPHIASASK 326


>At1g01510.1 68414.m00067 C-terminal binding protein (ANGUSTIFOLIA)
           nearly identical to C-terminal binding protein
           ANGUSTIFOLIA [Arabidopsis thaliana] GI:15408535;
           contains Pfam profile PF02826: D-isomer specific
           2-hydroxyacid dehydrogenase, NAD binding domain
          Length = 636

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 1   LIESTRNFINADVLKQCKKGVKIINVGRGGLIQETDFLQALKSGKVGGAALD 156
           L   T   +NA+ L+  K G  ++N G   L+ +    Q L  G + G ALD
Sbjct: 233 LTNDTVQILNAECLQHIKPGAFLVNTGSCQLLDDCAVKQLLIDGTIAGCALD 284


>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -2

Query: 348  HG*LRPAESGMFPASPGSRAAQQSPGQLSPELLSRGPQMWSGNYSRLLNNLQSDR 184
            HG + P+   M P  P +   + +P Q     +  GP++  G Y+R  N +  ++
Sbjct: 1435 HGGILPSPLNMPPMLPINHVRRSTPHQSVTARVPYGPRLSGGGYNRSGNRVPRNK 1489


>At3g26750.1 68416.m03346 expressed protein
          Length = 526

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -2

Query: 105 CLLNKPASTHVDDFHTFLALLQDIGIDKVSSRLNE 1
           C+L++   T V+ F + LAL  D+G+ +  SR++E
Sbjct: 236 CILSEKGGTEVE-FESSLALSCDVGVVEPGSRISE 269


>At3g25260.1 68416.m03155 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 515

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 138 HLSRLQSLQEICLLNKPASTHVDDFHTFLALLQDIG 31
           H ++ + L +  L NK ++T V++  TFLALL   G
Sbjct: 271 HHNKFKFLNKAKLNNKISATQVEETRTFLALLPIFG 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,276,315
Number of Sequences: 28952
Number of extensions: 222049
Number of successful extensions: 700
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)