Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40351
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei... 41 7e-04
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ... 33 0.14
At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein ... 33 0.14
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ... 33 0.18
At3g53600.1 68416.m05920 zinc finger (C2H2 type) family protein ... 33 0.24
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 32 0.32
At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein ... 32 0.32
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ... 32 0.32
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 32 0.32
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ... 32 0.32
At1g80730.1 68414.m09472 zinc finger (C2H2 type) family protein ... 32 0.32
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ... 32 0.32
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 32 0.42
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 32 0.42
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2) 31 0.73
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ... 31 0.73
At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ... 31 0.73
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ... 31 0.73
At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein ... 31 0.96
At5g57520.1 68418.m07187 zinc finger (C2H2 type) family protein ... 31 0.96
At5g40310.1 68418.m04890 exonuclease family protein contains exo... 31 0.96
At1g66140.1 68414.m07506 zinc finger (C2H2 type) family protein ... 31 0.96
At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ... 31 0.96
At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein ... 30 1.3
At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein ... 30 1.3
At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein ... 30 1.3
At1g24625.1 68414.m03099 zinc finger (C2H2 type) family protein ... 30 1.7
At5g25160.1 68418.m02983 zinc finger (C2H2 type) family protein ... 29 2.2
At5g10970.1 68418.m01275 zinc finger (C2H2 type) family protein ... 29 2.2
At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein ... 29 2.2
At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein ... 29 2.2
At1g21130.2 68414.m02643 O-methyltransferase, putative similar t... 29 2.2
At1g21130.1 68414.m02642 O-methyltransferase, putative similar t... 29 2.2
At5g05120.1 68418.m00543 zinc finger (C2H2 type) family protein ... 29 2.9
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ... 29 3.9
At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein ... 29 3.9
At5g14010.1 68418.m01638 zinc finger (C2H2 type) family protein ... 28 5.1
At1g21100.1 68414.m02639 O-methyltransferase, putative similar t... 28 5.1
At5g60650.1 68418.m07612 expressed protein ; expression support... 27 9.0
At5g15480.1 68418.m01812 zinc finger (C2H2 type) family protein ... 27 9.0
At5g13700.1 68418.m01595 polyamine oxidase, putative similar to ... 27 9.0
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 27 9.0
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 27 9.0
At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein ... 27 9.0
At3g19220.1 68416.m02439 expressed protein 27 9.0
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 27 9.0
>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
40S RIBOSOMAL PROTEINs - different species
Length = 182
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = -1
Query: 101 VRKLKFHEGKLLKKVDFISWKLDNNISEVKV 9
+RKLK+HE KL+KKV+F+ WK + N E ++
Sbjct: 1 MRKLKYHEKKLIKKVNFLEWKREGNHRENEI 31
>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 419
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 347 RKLRPKCEFVCKYCQRRFTKSYNLMIHERTHKSP 448
R L +VC+ C + F + NL +H R HK P
Sbjct: 62 RTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVP 95
>At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 362
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 347 RKLRPKCEFVCKYCQRRFTKSYNLMIHERTHKSP 448
R L +VC+ C + F + NL +H R HK P
Sbjct: 31 RTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVP 64
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 335 RDFRRKLRPKCEFVCKYCQRRFTKSYNLMIHERTHKSPELSFSCEVCGKSFKRQDN 502
+ FRRK ++VC+ C + + + H +T S SC+ CG+ F R ++
Sbjct: 106 KHFRRKHSVHKQWVCERCSKGYAVQSDYKAHLKTCGS--RGHSCD-CGRVFSRVES 158
>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 439
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 347 RKLRPKCEFVCKYCQRRFTKSYNLMIHERTHKSP 448
R L ++C+ C + F + NL +H R HK P
Sbjct: 59 RTLLESDRYICEICNQGFQRDQNLQMHRRRHKVP 92
>At3g53600.1 68416.m05920 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 175
Score = 32.7 bits (71), Expect = 0.24
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +2
Query: 296 KMFAVMQIDEEHTRDFRRKLRPKCEFVCKYCQRRFTKSYNLMIHERTHKSPELSFSCEVC 475
+ F V QID + + K F CK C R+F L H +HK P+L E
Sbjct: 26 RSFVVKQIDVKQSTG--SKTNHNNHFECKTCNRKFDSFQALGGHRASHKKPKLIVDQEQV 83
Query: 476 GKSFKRQDNLRNTDVVNACGGEG 544
K +++++ + + G G
Sbjct: 84 -KHRNKENDMHKCTICDQMFGTG 105
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHKSP 448
FVC+ C + F + NL +H R H P
Sbjct: 61 FVCEICNKGFQRDQNLQLHRRGHNLP 86
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 458 FSCEVCGKSFKRQDNLR 508
F CE+C K F+R NL+
Sbjct: 61 FVCEICNKGFQRDQNLQ 77
>At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 503
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHKSP 448
FVC+ C + F + NL +H R H P
Sbjct: 82 FVCEICNKGFQRDQNLQLHRRGHNLP 107
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 458 FSCEVCGKSFKRQDNLR 508
F CE+C K F+R NL+
Sbjct: 82 FVCEICNKGFQRDQNLQ 98
>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
similar to potato PCP1 zinc finger protein, GenBank
accession number X82328 contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 402
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHKSP 448
FVC+ C + F + NL +H R H P
Sbjct: 82 FVCEICNKGFQRDQNLQLHRRGHNLP 107
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 458 FSCEVCGKSFKRQDNLR 508
F CE+C K F+R NL+
Sbjct: 82 FVCEICNKGFQRDQNLQ 98
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHKSP 448
FVC+ C + F + NL +H R H P
Sbjct: 63 FVCEICNKGFQRDQNLQLHRRGHNLP 88
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 458 FSCEVCGKSFKRQDNLR 508
F CE+C K F+R NL+
Sbjct: 63 FVCEICNKGFQRDQNLQ 79
>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
similar to finger protein pcp1 GB:S48856 from [Solanum
tuberosum] contains Pfam domain, PF00096: Zinc finger,
C2H2 type
Length = 513
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHKSP 448
FVC+ C + F + NL +H R H P
Sbjct: 99 FVCEICNKGFQRDQNLQLHRRGHNLP 124
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 458 FSCEVCGKSFKRQDNLR 508
F CE+C K F+R NL+
Sbjct: 99 FVCEICNKGFQRDQNLQ 115
>At1g80730.1 68414.m09472 zinc finger (C2H2 type) family protein
(ZFP1) identical to zinc finger protein, ZFP1
gi|790673|gb|AAA87297; contains zinc finger, C2H2 type,
domain, Prosite:PS00028
Length = 228
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 275 ASHLSPDKMFAVMQIDEEHTRDFRRKLRPKCEFVCKYCQRRFTKSYNLMIHERTHK 442
+S L+ F H + + +L F C YCQR+F S L H+ HK
Sbjct: 36 SSELNLIDSFKTSSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQALGGHQNAHK 91
>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 32.3 bits (70), Expect = 0.32
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHKSP 448
F+C+ C + F + NL +H+R H P
Sbjct: 92 FICEVCNKGFQRDQNLQLHKRGHNLP 117
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 458 FSCEVCGKSFKRQDNLR 508
F CEVC K F+R NL+
Sbjct: 92 FICEVCNKGFQRDQNLQ 108
>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 446
Score = 31.9 bits (69), Expect = 0.42
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHKSP 448
F+C+ C + F + NL +H R H P
Sbjct: 68 FICEVCNKGFKRDQNLQLHRRGHNLP 93
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 458 FSCEVCGKSFKRQDNLR 508
F CEVC K FKR NL+
Sbjct: 68 FICEVCNKGFKRDQNLQ 84
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 31.9 bits (69), Expect = 0.42
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHKSP 448
F+C+ C + F + NL +H R H P
Sbjct: 81 FICEVCNKGFQREQNLQLHRRGHNLP 106
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 458 FSCEVCGKSFKRQDNLR 508
F CEVC K F+R+ NL+
Sbjct: 81 FICEVCNKGFQREQNLQ 97
>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
Length = 638
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 464 CEVCGKSFKRQDNLRNTDVVNACGGEGDGST 556
C V G+ F +++ L N+ N CGG+G GS+
Sbjct: 330 CSV-GRGFLKKNKLGNSSNPNTCGGDGGGSS 359
>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
(ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
type
Length = 178
Score = 31.1 bits (67), Expect = 0.73
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 368 EFVCKYCQRRFTKSYNLMIHERTHKSPELS 457
+F CK C +RF+ L H +HK P+L+
Sbjct: 46 QFECKTCNKRFSSFQALGGHRASHKKPKLT 75
>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 516
Score = 31.1 bits (67), Expect = 0.73
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHKSP 448
F+C C + F + NL +H R H P
Sbjct: 83 FICDVCNKGFQREQNLQLHRRGHNLP 108
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 458 FSCEVCGKSFKRQDNLR 508
F C+VC K F+R+ NL+
Sbjct: 83 FICDVCNKGFQREQNLQ 99
>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
similar to zinc finger protein ID1 GB:AAC18941
GI:3170601 from [Zea mays] contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 467
Score = 31.1 bits (67), Expect = 0.73
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHKSP 448
F+C+ C + F + NL +H R H P
Sbjct: 82 FLCEVCNKGFQREQNLQLHRRGHNLP 107
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 458 FSCEVCGKSFKRQDNLR 508
F CEVC K F+R+ NL+
Sbjct: 82 FLCEVCNKGFQREQNLQ 98
>At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 392
Score = 30.7 bits (66), Expect = 0.96
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHKSP 448
F C+ C + F + NL +H+R H P
Sbjct: 6 FFCEICNKGFQREQNLQLHKRGHNLP 31
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 458 FSCEVCGKSFKRQDNLR 508
F CE+C K F+R+ NL+
Sbjct: 6 FFCEICNKGFQREQNLQ 22
>At5g57520.1 68418.m07187 zinc finger (C2H2 type) family protein
(ZFP2) identical to zinc finger protein 2 (ZFP2)
GI:790674 from [Arabidopsis thaliana]; contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 150
Score = 30.7 bits (66), Expect = 0.96
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHK 442
F C YCQR+F S L H+ HK
Sbjct: 52 FSCNYCQRKFYSSQALGGHQNAHK 75
>At5g40310.1 68418.m04890 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 348
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 365 CEFVCKYCQRRFTKSYNLMIHERTHKSPELSFSCEVCGKSFKRQDNLR 508
C C C R+F K +L+ H R +C +C K + D+LR
Sbjct: 4 CRNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLR 51
>At1g66140.1 68414.m07506 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 260
Score = 30.7 bits (66), Expect = 0.96
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHK 442
F C YCQR+F S L H+ HK
Sbjct: 85 FSCNYCQRKFYSSQALGGHQNAHK 108
>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 30.7 bits (66), Expect = 0.96
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 368 EFVCKYCQRRFTKSYNLMIHERTHKSPELSFSCE 469
+FVCK+C +RF +L H RTH + + S E
Sbjct: 8 KFVCKFCSKRFPCGKSLGGHIRTHMNENSADSDE 41
>At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 466
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHKSP 448
F+C+ C + F + NL +H R H P
Sbjct: 66 FLCEVCGKGFQRDQNLQLHRRGHNLP 91
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 458 FSCEVCGKSFKRQDNLR 508
F CEVCGK F+R NL+
Sbjct: 66 FLCEVCGKGFQRDQNLQ 82
>At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 373
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 380 KYCQRRFTKSYNLMIHERTHKSPELSFSCEVCGKSFKRQDNLR 508
K+ + + SY+++ + + + C++CGK FKR NLR
Sbjct: 191 KHRSKPSSGSYDILELDVADLLAKYTHYCQICGKGFKRDANLR 233
>At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein
contains Zinc finger,C2H2 type,domain contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 506
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHKSP 448
F+C+ C + F + NL +H R H P
Sbjct: 70 FLCEICGKGFQRDQNLQLHRRGHNLP 95
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 458 FSCEVCGKSFKRQDNLR 508
F CE+CGK F+R NL+
Sbjct: 70 FLCEICGKGFQRDQNLQ 86
>At1g24625.1 68414.m03099 zinc finger (C2H2 type) family protein
(ZFP7) identical to zinc finger protein, ZFP7
gi|790685|gb|AAA87303; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 209
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 326 EHTRDFRRKLRPKCEFVCKYCQRRFTKSYNLMIHERTHK 442
+ T+ + + P+ F C YC+R+F S L H+ HK
Sbjct: 45 DDTKSTKCEANPRV-FSCNYCRRKFYSSQALGGHQNAHK 82
>At5g25160.1 68418.m02983 zinc finger (C2H2 type) family protein
(ZFP3) identical to zinc finger protein, ZFP3
gi|790677|gb|AAA87299; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 235
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHK 442
F C YCQR F S L H+ HK
Sbjct: 61 FSCNYCQRTFYSSQALGGHQNAHK 84
>At5g10970.1 68418.m01275 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type domain, Prosite:PS00028
Length = 272
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHK 442
F C YCQR F S L H+ HK
Sbjct: 104 FSCNYCQRTFYSSQALGGHQNAHK 127
>At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 407 SYNLMIHERTHKSPELSFSCEVCGKSFKRQDNLR 508
SY ++ E+ + C +CGK FKR NLR
Sbjct: 227 SYEILQLEKEEILAPHTHFCTICGKGFKRDANLR 260
>At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 407 SYNLMIHERTHKSPELSFSCEVCGKSFKRQDNLR 508
SY ++ E+ + C +CGK FKR NLR
Sbjct: 227 SYEILQLEKEEILAPHTHFCTICGKGFKRDANLR 260
>At1g21130.2 68414.m02643 O-methyltransferase, putative similar to
GI:2781394
Length = 296
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = +3
Query: 357 AQNASSFASTANVGSRSPTT**STNAPI------RVRSCRSAVKCAGRASSGK 497
A + SF S + + S+ PTT + AP+ R+ + S VKC G+ S GK
Sbjct: 58 ASRSDSFLSPSEIASKLPTTPRNPEAPVLLDRMLRLLASYSVVKC-GKVSEGK 109
>At1g21130.1 68414.m02642 O-methyltransferase, putative similar to
GI:2781394
Length = 373
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = +3
Query: 357 AQNASSFASTANVGSRSPTT**STNAPI------RVRSCRSAVKCAGRASSGK 497
A + SF S + + S+ PTT + AP+ R+ + S VKC G+ S GK
Sbjct: 58 ASRSDSFLSPSEIASKLPTTPRNPEAPVLLDRMLRLLASYSVVKC-GKVSEGK 109
>At5g05120.1 68418.m00543 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 201
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHK 442
+ CKYC R+F K+ L H+ H+
Sbjct: 27 YKCKYCPRKFDKTQALGGHQNAHR 50
>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 513
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = +2
Query: 371 FVCKYCQRRFTKS----YNLMIHERTHK--SPELSFSCEVCGKSFKRQD 499
+ C+ C+ F K N IHE T E F C+VCG+ K D
Sbjct: 65 YYCRECRSHFHKDCLTIINAKIHEHTLTFIRRENPFPCDVCGRDDKGMD 113
>At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 257
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 320 DEEHTRDFRRKLRPKCEFVCKYCQRRFTKSYNLMIHERTHK 442
D+E +D + F C YC R F S L H+ HK
Sbjct: 78 DKEKDKDKDKDNNNNRRFECHYCFRNFPTSQALGGHQNAHK 118
>At5g14010.1 68418.m01638 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 161
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 371 FVCKYCQRRFTKSYNLMIHERTHK 442
F C+YC R+F S L H+ HK
Sbjct: 38 FPCQYCPRKFYTSQALGGHQNAHK 61
>At1g21100.1 68414.m02639 O-methyltransferase, putative similar to
GI:2781394
Length = 373
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = +3
Query: 357 AQNASSFASTANVGSRSPTT**STNAPI------RVRSCRSAVKCAGRASSGK 497
A SF S + S+ PTT + AP+ R+ + S VKC G+A SGK
Sbjct: 58 ASRTDSFLSPYEIASKLPTTPRNPEAPVLLDRMLRLLASYSMVKC-GKALSGK 109
>At5g60650.1 68418.m07612 expressed protein ; expression supported
by MPSS
Length = 147
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 236 PSPEYSVKPRPS*ASHLSPDKMFAVMQIDEEHTRDFRRK 352
PSP S+ P PS S + PD + + DE T + RR+
Sbjct: 65 PSP-LSLSPSPSKTSIVEPDSQGSKVSSDEHTTSESRRE 102
>At5g15480.1 68418.m01812 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 402
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +2
Query: 428 ERTHKSPE----LSFSCEVCGKSFKRQDNLRN 511
++T +SPE + F CE CGK F+ + +N
Sbjct: 50 KKTQESPEPMKKILFRCEECGKGFRYEKYFKN 81
>At5g13700.1 68418.m01595 polyamine oxidase, putative similar to
SP|O64411 Polyamine oxidase precursor (EC 1.5.3.11) from
Zea mays
Length = 472
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 93 FSDHCRARANTRSRH**ITVFYCTSDSHRRAAD*FIRKLT*ITDSCDSHRPNTA-SSP 263
FSD+ AR N R I SDS+++A D I KL + C A SSP
Sbjct: 84 FSDYTNARFNIYDRSGKIFPTGIASDSYKKAVDSAILKLKSLEAQCSGQVAEEAPSSP 141
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 386 CQRRFTKSYNLMIHERTHKSPELSFSC--EVCGKSFKRQ 496
C ++F L++H+R HK E F C + C +FK Q
Sbjct: 1245 CGKKFRAHKYLVLHQRVHKD-ERPFECSWKGCSMTFKWQ 1282
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +2
Query: 371 FVCKY--CQRRFTKSYNLMIHERTHKSPELSFSCEV--CGKSFKRQDNLRN 511
++C Y C + F+ +NL H +TH S E C C K + + L+N
Sbjct: 138 YICTYEGCGKAFSLDFNLRSHMKTH-SQENYHICPYSGCVKRYAHEYKLKN 187
>At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 650
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 344 RRKLRPKCE--FVCKYCQRRFTKSYNLMIHERTHK 442
RRKL+ K + C C++ F S L H+R H+
Sbjct: 434 RRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHR 468
>At3g19220.1 68416.m02439 expressed protein
Length = 187
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 497 DNLRNTDVVNACGGEGDGSTIQQQRSLLQYSG 592
D R+ DV A GG G+G+ +++R L SG
Sbjct: 52 DTARSRDVSVAAGGNGEGAKWRKRRLLWSKSG 83
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 437 HKSPELSFSCEVCGKSFKRQDNLR 508
H P + F+C +C K+F R +N++
Sbjct: 174 HVGP-MQFACSICSKTFNRYNNMQ 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,301,697
Number of Sequences: 28952
Number of extensions: 333221
Number of successful extensions: 978
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -