Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40350
         (729 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XJ88 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_UPI0001593A45 Cluster: Transcription factor p65/Interfe...    33   9.5  
UniRef50_Q7RDR7 Cluster: Putative uncharacterized protein PY0535...    33   9.5  
UniRef50_Q04206 Cluster: Transcription factor p65; n=62; Amniota...    33   9.5  

>UniRef50_Q4XJ88 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 73

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 713 LFFICFQSFDIHTHNDTSYHISADSLSKLVTLFVTNLNSNIKH 585
           LF  C + + +  +NDT Y +  D+    +  +VT LN NIK+
Sbjct: 28  LFARCSKPYIVGDNNDTHYFLQIDTNYNKIFFYVTKLNINIKN 70


>UniRef50_UPI0001593A45 Cluster: Transcription factor p65/Interferon
           regulator; n=1; Homo sapiens|Rep: Transcription factor
           p65/Interferon regulator - Homo sapiens
          Length = 540

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 324 KTRPLVKFGLYKAVYNNFLYLITKSPPHKPH 232
           KT P +K   Y       + L+TK PPH+PH
Sbjct: 39  KTHPTIKINGYTGPGTVRISLVTKDPPHRPH 69


>UniRef50_Q7RDR7 Cluster: Putative uncharacterized protein PY05354;
            n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein PY05354 - Plasmodium yoelii yoelii
          Length = 1317

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 444  DKCCLN-GQIGIFAA*NLQQSCILLNVCNSASYPLGHDNLLCK 569
            ++C LN G   I    +  +SC L ++CN+ S  LG  N+ CK
Sbjct: 1205 NQCLLNNGSNNIIPINDNNESCNLTHICNTNSENLGDSNICCK 1247


>UniRef50_Q04206 Cluster: Transcription factor p65; n=62;
           Amniota|Rep: Transcription factor p65 - Homo sapiens
           (Human)
          Length = 551

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 324 KTRPLVKFGLYKAVYNNFLYLITKSPPHKPH 232
           KT P +K   Y       + L+TK PPH+PH
Sbjct: 56  KTHPTIKINGYTGPGTVRISLVTKDPPHRPH 86


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 751,521,939
Number of Sequences: 1657284
Number of extensions: 15412399
Number of successful extensions: 29292
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29290
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)