Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40350
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    25   0.73 
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    25   0.73 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.0  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -2

Query: 389 HKVYRLQLQCKKIQNYMDKTLSKLGHWLS 303
           H     Q QCKK      + L KL  W +
Sbjct: 66  HITEAFQTQCKKCTEIQKQNLDKLAEWFT 94


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -2

Query: 389 HKVYRLQLQCKKIQNYMDKTLSKLGHWLS 303
           H     Q QCKK      + L KL  W +
Sbjct: 66  HITEAFQTQCKKCTEIQKQNLDKLAEWFT 94


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 324 KTRPLVKFGLYKAVYNNFLYLITKSPPHKPH 232
           KT P +K   YK      +  +TK  P++PH
Sbjct: 82  KTFPTIKIVGYKGRALVVVSCVTKDQPYRPH 112


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 324 KTRPLVKFGLYKAVYNNFLYLITKSPPHKPH 232
           KT P +K   YK      +  +TK  P++PH
Sbjct: 82  KTFPTIKIVGYKGRALVVVSCVTKDQPYRPH 112


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 529 ELHTFNKMHDCCRFYAAKIP 470
           ELH   +  +CCR + +K P
Sbjct: 390 ELHMQPRKKNCCRSWLSKFP 409


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 529 ELHTFNKMHDCCRFYAAKIP 470
           ELH   +  +CCR + +K P
Sbjct: 390 ELHMQPRKKNCCRSWLSKFP 409


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 264  LITKSPPHKPHIDISSS 214
            LI  +PPH P I ++++
Sbjct: 1361 LIVHAPPHSPQITLTAT 1377


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 727 FYYPNCFLFVFNLLIFTPTTT 665
           F  P C  F+F L   T +TT
Sbjct: 113 FMGPKCAAFLFQLSFATTSTT 133


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 142 EHRD*TLY*LGVTISHHRVASVCSVYLI 59
           EHRD  +Y     + HH+V    S YL+
Sbjct: 63  EHRDLPIYQSHHHLHHHQVLYQQSPYLM 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,073
Number of Sequences: 438
Number of extensions: 4617
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)