Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40348
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    36   0.006
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    31   0.12 
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    28   1.5  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.7  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    26   6.2  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   6.2  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   8.2  

>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 24/61 (39%), Positives = 35/61 (57%)
 Frame = +2

Query: 512 DDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTER 691
           +D Y+Y + E E+E ++K FSSV    Q E LS   +  LI+E L  +AKF   + R  +
Sbjct: 410 NDLYWYLVVEIEDEPVSKLFSSVMFLFQKE-LSKSVEGRLIRETLSAQAKFVEKLLRISK 468

Query: 692 S 694
           S
Sbjct: 469 S 469


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -3

Query: 353 SFRFFVSPPITPRSFYKRRHNFTFGIRASPFLFTFPSTL--AGFCFSTMDGAPTTGDCVG 180
           S +F VS P + +S Y    NFT  I  S  L +FP+T+  + F +S++    TT +   
Sbjct: 503 SSQFTVSVPSSTQS-YSTSSNFTTPITISTSLSSFPTTIVSSSFQYSSLSSNVTTTNAQS 561

Query: 179 SPSSMIRLSA 150
           S  S    SA
Sbjct: 562 SSLSSSNSSA 571


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 420 MEIHKPEPENAFNILQTPSARTRDSS 497
           +E +  E +NAFNILQT S   RD +
Sbjct: 3   LEENVKEAKNAFNILQTLSVEDRDDA 28


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +2

Query: 524 FYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMK 703
           F+ L E+ +    +    +  + +     N  K EL Q+ L  +      +K T+RS  K
Sbjct: 356 FHKLIEERQRQHEERLKRINANKKALEELNQKKRELAQQQLKEQELLMQKIKETDRSGNK 415

Query: 704 RM 709
           R+
Sbjct: 416 RL 417


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 524 FYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKN 625
           FY + E+ E++ T E   +YE     RLS+ +++
Sbjct: 363 FYQMYENIEKFFTTENGGLYESIVSGRLSHFSRS 396


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 393 APFNNNQFLMEIHKPEPENAFNILQTPSARTRDSSFSVDQMITI 524
           A  NNN      H+  PEN  N+  T +  +++++ S++ +  +
Sbjct: 585 ADLNNNLVKQIQHRVPPENQSNLEHTITTSSKNTTSSINPLTAV 628


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 66  NQCTIRIDCSSIINRKEGIIDQLLFPNGRG*SYHRRWRTDAITS 197
           N  T R   + ++N + G+    +F +G G  YH     D  T+
Sbjct: 272 NTATRRALMNGVLNGRNGLGSIFVFASGNGGHYHDNCNFDGYTN 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,200
Number of Sequences: 5004
Number of extensions: 52606
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)