Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40348
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    26   0.41 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    26   0.41 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   0.94 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   0.94 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   0.94 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   0.94 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 438 EPENAFNILQTPSARTRDSSFSVDQMITIFMLCLKTKKN 554
           EP+N+ N    P  R  + + SVD+M    +     KKN
Sbjct: 361 EPDNSSNFAMKPLVRQPEDTMSVDRMQHCELHMQPRKKN 399


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 438 EPENAFNILQTPSARTRDSSFSVDQMITIFMLCLKTKKN 554
           EP+N+ N    P  R  + + SVD+M    +     KKN
Sbjct: 361 EPDNSSNFAMKPLVRQPEDTMSVDRMQHCELHMQPRKKN 399


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 506 RSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEY-LLLEAKFENLVKR 682
           R  D  +  L  +EE+ L +  S        ER  N  KNE  +EY    E   E    R
Sbjct: 13  RKKDRQYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNE--REYRKYRETSKERSRDR 70

Query: 683 TERSKMK 703
           TER + +
Sbjct: 71  TERERSR 77


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 506 RSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEY-LLLEAKFENLVKR 682
           R  D  +  L  +EE+ L +  S        ER  N  KNE  +EY    E   E    R
Sbjct: 13  RKKDRQYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNE--REYRKYRETSKERSRDR 70

Query: 683 TERSKMK 703
           TER + +
Sbjct: 71  TERERSR 77


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 506 RSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEY-LLLEAKFENLVKR 682
           R  D  +  L  +EE+ L +  S        ER  N  KNE  +EY    E   E    R
Sbjct: 13  RKKDRQYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNE--REYRKYRETSKERSRDR 70

Query: 683 TERSKMK 703
           TER + +
Sbjct: 71  TERERSR 77


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 506 RSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEY-LLLEAKFENLVKR 682
           R  D  +  L  +EE+ L +  S        ER  N  KNE  +EY    E   E    R
Sbjct: 13  RKKDRQYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNE--REYRKYRETSKERSRDR 70

Query: 683 TERSKMK 703
           TER + +
Sbjct: 71  TERERSR 77


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 452 VQYTSDAFSTHS*FQF*CRSDDNYFYALPEDEEE 553
           +Q+     S+H  FQ   RS +NY+    E  EE
Sbjct: 529 MQFGDKLESSHDSFQAALRSIENYYSGKLERTEE 562


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 452 VQYTSDAFSTHS*FQF*CRSDDNYFYALPEDEEE 553
           +Q+     S+H  FQ   RS +NY+    E  EE
Sbjct: 567 MQFGDKLESSHDSFQAALRSIENYYSGKLERTEE 600


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,911
Number of Sequences: 438
Number of extensions: 3926
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)