Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40347
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.32 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 196 NVTILCPRTTVCTLKSMENHNGRQNR*KQISDF-LDRRTSE 315
           NV  L P  ++C+L +++  N  +NR + I+D  L+RR S+
Sbjct: 158 NVQAL-PVNSLCSLDNLQTLNLTENRLRDINDIGLNRRDSD 197


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 445 QLLRAMGELRDTGNIHLNLGRHTALRN 525
           Q+L A GEL  T  IH   G +T  R+
Sbjct: 246 QVLMASGELELTLRIHRGGGTNTDARH 272


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 77  SDCDNINKTFCDHFVICDLKGKSN 6
           S C N N T C+ F   +L G S+
Sbjct: 709 SKCHNRNVTTCNMFRKTNLSGDSS 732


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 359 GWASLRRARRADPAASVAPLLAIQLSHPGSYSG 457
           G+AS       DP +  + +   +LS PGS +G
Sbjct: 131 GYASPMSTSSYDPYSPNSKIGRDELSQPGSLNG 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,835
Number of Sequences: 438
Number of extensions: 3256
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)