Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40346
         (732 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F6C5 Cluster: Coiled-coil domain containing 25 protei...    55   2e-06
UniRef50_Q86WR0 Cluster: Coiled-coil domain-containing protein 2...    46   0.001
UniRef50_Q9W3T2 Cluster: CG4593-PA; n=13; Eukaryota|Rep: CG4593-...    41   0.027
UniRef50_Q29IN0 Cluster: GA18284-PA; n=2; Endopterygota|Rep: GA1...    41   0.027
UniRef50_Q7T312 Cluster: Coiled-coil domain-containing protein 2...    41   0.036
UniRef50_A3LRK6 Cluster: Predicted protein; n=3; Saccharomycetac...    35   1.8  
UniRef50_A6QXA2 Cluster: Putative uncharacterized protein; n=1; ...    34   3.1  
UniRef50_Q6P625 Cluster: Queuine tRNA-ribosyltransferase; n=5; E...    33   5.5  
UniRef50_Q6MKM9 Cluster: Putative uncharacterized protein precur...    33   7.2  
UniRef50_A2QPV0 Cluster: Contig An08c0020, complete genome; n=8;...    33   7.2  

>UniRef50_Q2F6C5 Cluster: Coiled-coil domain containing 25 protein;
           n=6; Eukaryota|Rep: Coiled-coil domain containing 25
           protein - Bombyx mori (Silk moth)
          Length = 207

 Score = 55.2 bits (127), Expect = 2e-06
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +1

Query: 280 SYSTLMKAENMSTNYDGNDSDDFM 351
           SYSTLMKAENMSTNYDGNDSDDFM
Sbjct: 184 SYSTLMKAENMSTNYDGNDSDDFM 207



 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +2

Query: 89  KVAKRNNEIVNRLNKTKTESFP 154
           KVAKRNNEIVNRLNKTKTESFP
Sbjct: 120 KVAKRNNEIVNRLNKTKTESFP 141


>UniRef50_Q86WR0 Cluster: Coiled-coil domain-containing protein 25;
           n=28; Eukaryota|Rep: Coiled-coil domain-containing
           protein 25 - Homo sapiens (Human)
          Length = 208

 Score = 45.6 bits (103), Expect = 0.001
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +1

Query: 280 SYSTLMKAENMSTNYDGNDSDDFM 351
           SYS+LMK ENMS+N DGNDSD+FM
Sbjct: 185 SYSSLMKVENMSSNQDGNDSDEFM 208


>UniRef50_Q9W3T2 Cluster: CG4593-PA; n=13; Eukaryota|Rep: CG4593-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 209

 Score = 41.1 bits (92), Expect = 0.027
 Identities = 18/25 (72%), Positives = 22/25 (88%), Gaps = 1/25 (4%)
 Frame = +1

Query: 280 SYSTLMKAENMSTNYD-GNDSDDFM 351
           SY++L K+ENM TNYD GN+SDDFM
Sbjct: 185 SYASLQKSENMRTNYDAGNESDDFM 209



 Score = 33.9 bits (74), Expect = 4.1
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +2

Query: 53  LVFKNECSTG*PKVAKRNNEIVNRLNKTKTE 145
           + + NE +    ++ KR NEIVNRLN+TKTE
Sbjct: 108 VAYHNEKAVRRIRLEKRINEIVNRLNRTKTE 138


>UniRef50_Q29IN0 Cluster: GA18284-PA; n=2; Endopterygota|Rep:
           GA18284-PA - Drosophila pseudoobscura (Fruit fly)
          Length = 209

 Score = 41.1 bits (92), Expect = 0.027
 Identities = 18/25 (72%), Positives = 22/25 (88%), Gaps = 1/25 (4%)
 Frame = +1

Query: 280 SYSTLMKAENMSTNYD-GNDSDDFM 351
           SY++L K+ENM TNYD GN+SDDFM
Sbjct: 185 SYASLQKSENMRTNYDAGNESDDFM 209



 Score = 33.1 bits (72), Expect = 7.2
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +2

Query: 53  LVFKNECSTG*PKVAKRNNEIVNRLNKTKTE 145
           + + NE +    ++ KR NEIVNRLN+TKTE
Sbjct: 108 VAYINEGAVRKIRLEKRVNEIVNRLNRTKTE 138


>UniRef50_Q7T312 Cluster: Coiled-coil domain-containing protein 25;
           n=26; Eukaryota|Rep: Coiled-coil domain-containing
           protein 25 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 207

 Score = 40.7 bits (91), Expect = 0.036
 Identities = 16/24 (66%), Positives = 22/24 (91%)
 Frame = +1

Query: 280 SYSTLMKAENMSTNYDGNDSDDFM 351
           +Y++LMK++NM+TN DG DSDDFM
Sbjct: 184 NYTSLMKSDNMTTNEDGYDSDDFM 207


>UniRef50_A3LRK6 Cluster: Predicted protein; n=3;
           Saccharomycetaceae|Rep: Predicted protein - Pichia
           stipitis (Yeast)
          Length = 232

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +2

Query: 50  SLVFKNECSTG*PKVAKRNNEIVNRLNKTKTE 145
           ++ FKN       KV K+ N IVN+LNKTKTE
Sbjct: 128 TVTFKNPKLVKRVKVVKKENAIVNKLNKTKTE 159


>UniRef50_A6QXA2 Cluster: Putative uncharacterized protein; n=1;
           Ajellomyces capsulatus NAm1|Rep: Putative
           uncharacterized protein - Ajellomyces capsulatus NAm1
          Length = 202

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 92  VAKRNNEIVNRLNKTKTESFP 154
           +A R N IVNRLNKT+ E FP
Sbjct: 110 IAARQNPIVNRLNKTRVEKFP 130


>UniRef50_Q6P625 Cluster: Queuine tRNA-ribosyltransferase; n=5;
           Eukaryota|Rep: Queuine tRNA-ribosyltransferase - Xenopus
           tropicalis (Western clawed frog) (Silurana tropicalis)
          Length = 396

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -1

Query: 639 LTCNLCKLQMRLMRTMRENIENGTFPAFGTTICERSL-SQWPISYWVVNSLSSVGINL 469
           +T +    Q+ LMR++R++I  G FP F          S+     W V++L +VGI L
Sbjct: 338 ITIHNIAYQLNLMRSVRDSILQGRFPQFVQDFMRTMYSSRDKYPQWAVDALETVGITL 395


>UniRef50_Q6MKM9 Cluster: Putative uncharacterized protein
           precursor; n=1; Bdellovibrio bacteriovorus|Rep: Putative
           uncharacterized protein precursor - Bdellovibrio
           bacteriovorus
          Length = 306

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 556 KSWKCTIFNIFSHSPHKTHLQFTKITSQF*YTYIV*NYKI 675
           ++W  T+FN+ S +  K   + T   SQ  YTYI  NYK+
Sbjct: 38  RNWNFTLFNVVSQANMKPGKEQTDGRSQDSYTYISMNYKV 77


>UniRef50_A2QPV0 Cluster: Contig An08c0020, complete genome; n=8;
           Pezizomycotina|Rep: Contig An08c0020, complete genome -
           Aspergillus niger
          Length = 213

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 92  VAKRNNEIVNRLNKTKTESFP 154
           V +R N IVNRLNKT+ E FP
Sbjct: 121 VRQRENPIVNRLNKTRIEKFP 141


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,467,110
Number of Sequences: 1657284
Number of extensions: 9008698
Number of successful extensions: 21193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21181
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)