Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40346
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0012 - 7355493-7355645,7356309-7356370,7356885-7356972,735...    36   0.044
01_06_0717 - 31446860-31447074,31447183-31447270,31448909-314490...    32   0.54 
07_03_1275 + 25382959-25383765,25383850-25384050,25384693-253848...    28   8.8  

>05_03_0012 -
           7355493-7355645,7356309-7356370,7356885-7356972,
           7357677-7357780,7357931-7358010,7359127-7359183,
           7359924-7360036
          Length = 218

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 17/22 (77%), Positives = 17/22 (77%)
 Frame = +2

Query: 89  KVAKRNNEIVNRLNKTKTESFP 154
           KV KR NEIVNRLNKTK E  P
Sbjct: 123 KVEKRINEIVNRLNKTKVERKP 144


>01_06_0717 -
           31446860-31447074,31447183-31447270,31448909-31449012,
           31449618-31449745,31450461-31450555,31461823-31463115,
           31463188-31464039,31464568-31464621
          Length = 942

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 92  VAKRNNEIVNRLNKTKTESFP 154
           V KR NEI+NRLNKT+ E  P
Sbjct: 848 VEKRVNEIINRLNKTRVERRP 868


>07_03_1275 +
           25382959-25383765,25383850-25384050,25384693-25384888,
           25385583-25385767
          Length = 462

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 512 DIGHWDKLRSQIVVPKAGNVPFSIFSLIVLIRRICNLQRLQVNFNIPT 655
           D+  W   RS + +P   ++ + I+     + R C + RL    +IP+
Sbjct: 234 DVMDWTSTRSWLNLPVGLSMEYEIYKATNTLNRYCQVARLNPEKSIPS 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,158,651
Number of Sequences: 37544
Number of extensions: 226316
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)