Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40344
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    42   8e-05
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    29   0.60 
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    28   1.4  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   1.8  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   2.4  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    27   2.4  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   3.2  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    27   3.2  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   5.6  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   5.6  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    25   7.4  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   9.8  

>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = +3

Query: 255 DDVILVATDGVFDNVPEPVL--VAEMRRAQGLAADPQKLQSVANSIAWMARNLSFDGCYM 428
           +D++++ATDG+FDN+ E  +  +A +     L+   + L  +A  I   A   S D  + 
Sbjct: 205 NDLVILATDGIFDNIEEKSILDIAGVVDFSSLSNVQKCLDDLAMRICRQAVLNSLDTKWE 264

Query: 429 SPFAKSARQNGIDAIGG 479
           SPFAK+A+  G    GG
Sbjct: 265 SPFAKTAKSFGFKFQGG 281



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 16  GSSTACVMILDRNESLMRAANIGDSXXXXXXXXXXXXXSHEQQHYFNTPYQLSLPP 183
           GSSTAC+ + +     + + N+GDS             S  Q   FN PYQL++ P
Sbjct: 126 GSSTACLTLFNCGNGKLHSLNLGDSGFLILRNGAIHYASPAQVLQFNMPYQLAIYP 181


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 130 SHEQQHYFNTPYQL-SLPPPGHDRNVLSDRPESAD 231
           S   Q Y ++PY + S PPP   R  L+D P+++D
Sbjct: 674 SLNNQSYSSSPYSVFSHPPPYMGRQSLNDSPQTSD 708


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -3

Query: 172 SIGMAY*NSAVVRVSDRRHGRLVQ 101
           S+G+AY + A+ R+SD RH +++Q
Sbjct: 880 SLGLAYLHRAMQRLSDNRHYQILQ 903


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 276 TDGVFDNVPEPVLVAEMRR 332
           T+ VFD +PEP  ++EM+R
Sbjct: 24  TEVVFDEIPEPETLSEMKR 42


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 349 AASPWARLISATSTG-SGTLSKTPSVATRITSSTP 248
           A +P  R  SATST  + T S + S AT ITSS+P
Sbjct: 132 APNPIPRGDSATSTSIAPTYSASDSSATTITSSSP 166


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 316 TSTGSGTLSKTPSVATRITSSTPPETRLCP 227
           TS  S T+S TPS+   + +S PP T   P
Sbjct: 153 TSDTSSTVSSTPSLNHSLQNSMPPSTPTPP 182


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 299 DIVENSVRRHQDHIVHSTGNSAVSADSGLSLRTFLSCPG 183
           +I  N++  +QD ++ S  N  +++   L +R+FL   G
Sbjct: 190 NISANAIHVNQDKVIRSANNLIINSQPILPVRSFLDALG 228


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 185 RDTTGTSSAIGRNQRTQPSFR 247
           +DTT  S A+ R QR  P+FR
Sbjct: 485 KDTTSFSKALNRFQREDPTFR 505


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +3

Query: 306 PVLVAEMRRAQGLAADPQKLQSVANSIAWMARNLSFDGCYMSP 434
           P    E     GL   P+   S  N+  + A N SFDG Y  P
Sbjct: 243 PSSFEEQPLLNGLNDSPRNPVSRTNAEGFKALNASFDGSYKFP 285


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 532 ICDLHRYIVNNTFLLS*K-KTKLVVI 606
           + D+HRYI+ N FL+  + K KL VI
Sbjct: 394 LIDVHRYIIFNDFLIGLRPKDKLNVI 419


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 285 LRPSPPGSHRPLHRKLGCVR*FRPIAEDV 199
           LRP    +H  + R+LGC+    P+  D+
Sbjct: 347 LRPQVISNHPEIIRRLGCIAMNTPVEADI 375


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 353 VRGEPLGPSHLCDQHRFGDIVENSVRRHQDHIVHSTGNSAVSADSGLS 210
           VRG+ L P+ L     FGD   N +      I +S G S +  D+ L+
Sbjct: 272 VRGKGLDPNRLIHIQGFGDFAINRIYEAPQGIQNSRGIS-MDEDTNLT 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,674
Number of Sequences: 5004
Number of extensions: 57775
Number of successful extensions: 154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)