Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40343
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2)               29   2.9  
SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)          29   3.9  
SB_7783| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               28   5.1  
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               28   5.1  
SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.8  
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)                    27   9.0  
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)                     27   9.0  

>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 14  QCGSRFF*TRREATEHDRFVRRFLTGPVLFEIEI 115
           QCG   + +     E DR+V+R  T  V+FE E+
Sbjct: 98  QCGQAVWQSTANIEEQDRYVKRIATNYVMFENEL 131


>SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2)
          Length = 689

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 507 HVRRDIVLPILDAGHVFVILGRILQASREGRSGLFSRLKNL 385
           H+RR +VLP L A     +  +  Q+ R  RS  F R+ NL
Sbjct: 631 HLRRSLVLPTLAAKLRMTLQDKQNQSLRTNRSNQFRRMINL 671


>SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)
          Length = 486

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 455 TKTWPASRIGSTISLRT*TYAGRTAGIPGRGMRHAHHTLYNVVKNRQLYSEI 610
           T+T   +  G+  + RT  YAG    I  R ++HAHH     V++ +  + I
Sbjct: 220 TRTVQHAHCGTHGTTRTLRYAGYNRNIAVRTVQHAHHITTPTVQHARYNTHI 271


>SB_7783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 388 LEVRRAEQGLRYHNEQPPDREHD 320
           +E RR  QG+  HNE P +  HD
Sbjct: 217 IEPRRVTQGIDSHNELPMESSHD 239


>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 267

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 296 SNYENYHSIVFPVRRLFVVITKSLFCPPDLKFFNRE 403
           SNYE +  +  P R   +++  S F PP   F + E
Sbjct: 188 SNYERFRVLASPSRYPTLMVASSTFWPPSYSFKDEE 223


>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 494

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 296 SNYENYHSIVFPVRRLFVVITKSLFCPPDLKFFNRE 403
           SNYE +  +  P R   +++  S F PP   F + E
Sbjct: 188 SNYERFRVLASPSRYPTLMVASSTFWPPSYSFKDEE 223


>SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 358 EVPVLPAGPQVLQSREQAGPALP*RLQDPTKDHEDVAGVK 477
           E P+L A   V  S++   PA P ++  PTK    +  VK
Sbjct: 26  EAPILSAEKVVFSSQDNLPPAKPVKISMPTKSEYQLQFVK 65


>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
          Length = 1026

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = +2

Query: 218 LQLLRRILEPRDTSDGYRFVGFQENISNYENYHSIVFPVRRLFVVITKSLFCPPDLKFF 394
           L  +R    P  T+D   + G    +SNY     ++ P +      T S   P   K F
Sbjct: 532 LDAIREFPTPTSTTDIRSWFGLVNQVSNYAQLRDLMAPFKPFLFPATSSYGHPSSKKHF 590


>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
          Length = 1376

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 41  RREATEH-DRFVRRFLTGPVLFEIEIIRGGFRVAVRSLSPVAPRRK 175
           ++EAT    R VRR   G +L E + ++GG  + +  LS  A   K
Sbjct: 158 QKEATSAITRLVRRLSGGKILTESDAVKGGILILLTKLSEGAINAK 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,655,714
Number of Sequences: 59808
Number of extensions: 422735
Number of successful extensions: 1194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)