Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40343
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.4  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 377 PDLK--FFNRENRPDLPSLDACKILPRITKTW 466
           PDL   F +  NRP+L   D  K L  + K+W
Sbjct: 665 PDLLHLFGSWSNRPNLLFKDEAKDLVSVNKSW 696


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 377 PDLK--FFNRENRPDLPSLDACKILPRITKTW 466
           PDL   F +  NRP+L   D  K L  + K+W
Sbjct: 665 PDLLHLFGSWSNRPNLLFKDEAKDLVSVNKSW 696


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 377 PDLK--FFNRENRPDLPSLDACKILPRITKTW 466
           PDL   F +  NRP+L   D  K L  + K+W
Sbjct: 665 PDLLHLFGSWSNRPNLLFKDEAKDLVSVNKSW 696


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 93  GPVRKRRTKRSCSVASRRV*KN 28
           G + KR+T R+   A RR+  N
Sbjct: 870 GAIEKRKTLRASIAAQRRIQSN 891


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +2

Query: 257 SDGYRFVGFQENISNYENYHS 319
           S+ Y++  +    +NY NY++
Sbjct: 319 SNNYKYSNYNNYNNNYNNYNN 339


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 359 KSLFCPPDLKFF 394
           KSL C PDL  F
Sbjct: 32  KSLVCSPDLSVF 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,839
Number of Sequences: 438
Number of extensions: 4469
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)