Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40341
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21903| Best HMM Match : DUF21 (HMM E-Value=0) 106 2e-23
SB_55253| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35) 36 0.032
SB_59688| Best HMM Match : K-box (HMM E-Value=0.25) 33 0.30
SB_19953| Best HMM Match : Trehalase (HMM E-Value=0.66) 31 1.2
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 30 1.6
SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_38248| Best HMM Match : 7tm_1 (HMM E-Value=1e-06) 29 4.9
SB_14312| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_32863| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-06) 28 6.4
SB_44764| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5) 28 8.5
SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1) 28 8.5
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 28 8.5
SB_20463| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_19635| Best HMM Match : Met_10 (HMM E-Value=3.4e-13) 28 8.5
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09) 28 8.5
SB_13896| Best HMM Match : bZIP_1 (HMM E-Value=3.6) 28 8.5
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06) 28 8.5
>SB_21903| Best HMM Match : DUF21 (HMM E-Value=0)
Length = 1040
Score = 106 bits (255), Expect = 2e-23
Identities = 46/92 (50%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Frame = +3
Query: 3 PLRTLCQYYQNPCNFVFEDVTLDVMLKQFKEGHKGHMAFVQRIEE-GDGDPIYXTVGLLT 179
PL+T+ ++Y +P VF+D LDV+L++FK+ H H+A V+R+ + G+GDP Y +G++T
Sbjct: 712 PLQTVIKFYNHPVQRVFDDTHLDVLLEEFKKKHS-HLAIVERVNDTGEGDPFYEAIGIVT 770
Query: 180 LEDVIEEMIQAEIVDETDVFSDNRTRSA*PGR 275
LED++EE+IQ+EIVDETDV+ DN++ PGR
Sbjct: 771 LEDILEEIIQSEIVDETDVYLDNKSGKVVPGR 802
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/69 (46%), Positives = 50/69 (72%)
Frame = +2
Query: 314 QEHQRVHVSPQQVLATFQFLSTSVDPFRPEMISETVLRRLLKQDVIQHIKLKGDEDKNDI 493
Q+ +RV +SPQ LA FQ+LST+VD F ++IS VL+RL++QD+I I+L DK ++
Sbjct: 811 QDRERVKISPQLALAVFQYLSTAVDVFHEDIISTAVLKRLIEQDIITEIQLGDKSDKKEV 870
Query: 494 KRFVYRRGS 520
++Y+RG+
Sbjct: 871 --YLYKRGT 877
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 552 RVEVTVGRENLVFEAGPFTYFGVQALTQN 638
+VEV VG+E VFE GPFT+FG AL +
Sbjct: 889 KVEVNVGQEQFVFEEGPFTHFGGMALVNS 917
>SB_55253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 57 DVTLDVMLKQFKEGHKGHMAFVQRIEEGDGDPI-YXTVGLLTLEDVIEEMIQAEIVDETD 233
D L +L +F+ G +F +R G + T+G++TLEDV+E++IQ +I DETD
Sbjct: 291 DEPLFELLDKFQTGKSMCCSFRRRSVFKYGHKLGKRTLGIITLEDVLEQLIQEDIWDETD 350
Query: 234 V 236
V
Sbjct: 351 V 351
>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
Length = 681
Score = 35.9 bits (79), Expect = 0.032
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = -1
Query: 244 SLKTSVSSTISAWIISSMTSSRVSR-PTVSYIGSPSPSSMRWTNAM*PLCPSLNCFSMTS 68
S K S SS +IS+ T S S+ P+ + S SPS R T C S C + TS
Sbjct: 388 SSKHSQSSIFPELLISTTTYSSYSKIPSTVILPSASPSRWRLTQLSSQSCES--CSTRTS 445
Query: 67 KVTSSNTKLQGFW*YWQ 17
K SNT+ + Y Q
Sbjct: 446 KSQESNTETSSYLQYTQ 462
>SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)
Length = 884
Score = 32.7 bits (71), Expect = 0.30
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -1
Query: 676 PRINGAGASASPTFWVRACTPK*VKGPASKTRFSLP--TVTSTRL--PGSARNNPPASPP 509
P + G S SP +A G A + FS P TV+S+ L PG AR+NP SP
Sbjct: 234 PDRHSEGFSLSPRN-TQASRDHNTSGNAGEKSFSSPRQTVSSSSLKSPGRARHNPTISPR 292
Query: 508 INEAFDVVLILI 473
N FD L+
Sbjct: 293 QNVNFDAQKTLV 304
>SB_19953| Best HMM Match : Trehalase (HMM E-Value=0.66)
Length = 1097
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 277 DRPGQALLVRLSLKTSVSSTISAWIISSMTSSR 179
DR +LVR + STI+AWI++S+TS R
Sbjct: 849 DRIDHHILVRKLMTYDRLSTITAWIVNSLTSRR 881
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 277 DRPGQALLVRLSLKTSVSSTISAWIISSMTSSR 179
DR +LVR + + STI+AWI+ +TS R
Sbjct: 545 DRIDHHILVRKLMTYDLPSTITAWIVDFLTSRR 577
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 601 GPASKTRFSLPTVTSTRLPGSARNNPPASPPIN 503
GP + T+ SL T TRL S + +P SP I+
Sbjct: 269 GPKTSTKTSLETSLKTRLKTSLKTSPKTSPEIS 301
>SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 230 GLIHNLCLDHLLDDVFQSQ*TYCXVYWISVAFLD 129
G I+++ LD L + QS YC V+ SV +LD
Sbjct: 146 GYINSVLLDKELSEEVQSLILYCQVFRFSVQYLD 179
>SB_38248| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)
Length = 374
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -1
Query: 265 QALLVRLSLKTSVSSTISAWIISSMTSSRVSRPTVSYIGSPSPSSMRWTNA 113
Q L S S++ T + ++S M + SR Y+ +P P+S RWT A
Sbjct: 47 QTNLTNQSESLSMNPTNQSELLSDMNNQSQSR----YVWAPVPASFRWTAA 93
>SB_14312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 230 GLIHNLCLDHLLDDVFQSQ*TYCXVYWISVAFLD 129
G I+++ LD L + QS YC V+ SV +LD
Sbjct: 91 GYINSVLLDKELSEEVQSLILYCQVFRFSVQYLD 124
>SB_32863| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-06)
Length = 309
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = +2
Query: 272 PVNKFQDIGAFMGHQEHQR-VHVSPQQVLATFQFLSTSVDPFRPEMI--SETVLRRLLKQ 442
PV + Q + A + VH++PQ + +TF L ++ + ++I SET L++ +
Sbjct: 33 PVAEDQHLRALKDRSHQLKIVHINPQSMTSTFSSLLLKIERYSLDVITMSETWLKQ--NE 90
Query: 443 DVIQHIKL 466
++QH+ +
Sbjct: 91 LLLQHVTI 98
>SB_44764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 248 PYQKRLTRPVNKFQDIGAFMGHQEHQRVHVSPQQVLATFQF 370
P K+ RPV+ + +G HQE + P V+ QF
Sbjct: 390 PLDKQQARPVHPYHTVGCVFNHQEFY-ANSQPTDVVEVCQF 429
>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 259 LLVRLSLKTSVSSTISAWIISSMTSSR 179
+LVR + + STI+AWI+ +TS R
Sbjct: 784 ILVRKLMTYDLPSTITAWIVDFLTSRR 810
>SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5)
Length = 279
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 259 LLVRLSLKTSVSSTISAWIISSMTSSR 179
+LVR + + STI+AWI+ +TS R
Sbjct: 211 ILVRKLMTYDLPSTITAWIVDFLTSRR 237
>SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 259 LLVRLSLKTSVSSTISAWIISSMTSSR 179
+LVR + + STI+AWI+ +TS R
Sbjct: 504 ILVRKLMTYDLPSTITAWIVDFLTSRR 530
>SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1)
Length = 602
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 259 LLVRLSLKTSVSSTISAWIISSMTSSR 179
+LVR + + STI+AWI+ +TS R
Sbjct: 450 ILVRKLMTYDLPSTITAWIVDFLTSRR 476
>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
Length = 820
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -1
Query: 679 EPRINGAGASASPTFWVRACT-PK*VKG-PASKTRFSLPTVTSTRLPGSARNNPPASP 512
E NGA SP R+ T PK + P S +FSL + + LPG ++++ P SP
Sbjct: 757 ETHKNGAAIEKSPK---RSETLPKDIDVFPRSPRQFSLDEMIADMLPGDSKSDRPESP 811
>SB_20463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 259 LLVRLSLKTSVSSTISAWIISSMTSSR 179
+LVR + + STI+AWI+ +TS R
Sbjct: 210 ILVRKLMMYDLPSTITAWIVDFLTSRR 236
>SB_19635| Best HMM Match : Met_10 (HMM E-Value=3.4e-13)
Length = 564
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 259 LLVRLSLKTSVSSTISAWIISSMTSSR 179
+LVR + + STI+AWI+ +TS R
Sbjct: 526 ILVRKLMTYDLPSTITAWIVDFLTSRR 552
>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
Length = 959
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -1
Query: 679 EPRINGAGASASPTFWVRACT-PK*VKG-PASKTRFSLPTVTSTRLPGSARNNPPASP 512
E NGA SP R+ T PK + P S +FSL + + LPG ++++ P SP
Sbjct: 896 ETHKNGAAIEKSPK---RSETLPKDIDVFPRSPRQFSLDEMIADMLPGDSKSDRPESP 950
>SB_13896| Best HMM Match : bZIP_1 (HMM E-Value=3.6)
Length = 314
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 259 LLVRLSLKTSVSSTISAWIISSMTSSR 179
+LVR + + STI+AWI+ +TS R
Sbjct: 211 ILVRKLMTYDLPSTITAWIVDFLTSRR 237
>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
Length = 773
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 259 LLVRLSLKTSVSSTISAWIISSMTSSR 179
+LVR + + STI+AWI+ +TS R
Sbjct: 495 ILVRKLMTYDLPSTITAWIVDFLTSRR 521
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,864,531
Number of Sequences: 59808
Number of extensions: 460539
Number of successful extensions: 1535
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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