Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40340
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    31   0.19 
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    31   0.19 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.0  

>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 541 LQSPVLCQIRGFF*MKY-LNYACVYFFTYYNVYIKNKQ*NFGYSQILCV 398
           L  P+L  I G+  + Y L Y   YFF Y NV++K K  N G + ++ +
Sbjct: 328 LTEPILVCISGYIALIYALLYG--YFFAYPNVFVKGKGYNEGITGLMFI 374


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 321 LPHPSNRNALLLHGRNR*GSGASRADSQEVLP-PVKMGYRKVSCFTFIDSLY 169
           LP+  N   L LHG NR       A S EV     + G+ KVS F F+DS++
Sbjct: 198 LPYTGNSRGLYLHGLNRNCPQFITASSCEVAEFAEQWGFMKVSSF-FMDSIH 248


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 317 PTLQTETHYCFTAEIGRVVAPLVRTHKRSYHQ*KWVIGRLAALLLSIHYTG 165
           PTL T   Y F A    +++P +   K +     WV+     L++SI  TG
Sbjct: 375 PTLVTSNSYIFQAITVTLISPNLLPRKVAADLLTWVLSLKEPLVVSILETG 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,456
Number of Sequences: 5004
Number of extensions: 48030
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)