Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40340
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0705 - 5259949-5263887,5266207-5266509                           28   5.5  
10_07_0105 + 12922828-12923448,12923554-12923907,12924008-129243...    28   7.2  

>02_01_0705 - 5259949-5263887,5266207-5266509
          Length = 1413

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 236  SCESAREAPLPYLFLP*SSNAFRFEGWGSRCNYTKTLGLIIIN 364
            SC   +E+P+P +F   SSN F      S  N+TK   L + N
Sbjct: 886  SCHEDKESPIPLIFFNASSNHFSGSLDESISNFTKLTYLDLHN 928


>10_07_0105 +
           12922828-12923448,12923554-12923907,12924008-12924330,
           12928324-12928401,12928760-12928883
          Length = 499

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 318 PHPSNRNALLLHGRNR*GSGASRADSQEVLPPVKMG 211
           P P++   L +H   + GSGA+ A++  +  P+  G
Sbjct: 76  PAPASDKTLAVHAGEKLGSGAAAAETDSIATPIVGG 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,789,755
Number of Sequences: 37544
Number of extensions: 275755
Number of successful extensions: 384
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)