Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40338
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    29   0.86 
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    28   1.5  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   2.6  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   4.6  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    26   6.0  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 284 AHLLIHVVKKESLKRKSHLSKMILKESR-SI-QQLMEELICLKRHLLKKGEVKMMI 445
           A +LI V K+E  KRK  L   +LKE+  SI  +  + L     + LKK EV  +I
Sbjct: 54  AEILIDVPKEERQKRKQELKDQLLKENEGSISSKKKKRLDKYIENKLKKEEVASLI 109


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = -1

Query: 207 LMYFLNLINSVMVTGNIPETWKSQEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVK 28
           + Y L+  +S+    N     + ++ +A   PNK T   ++++P  + S+L  ++ H   
Sbjct: 150 VQYLLSGQHSLSCRMNACVLCRMEQHVARAYPNKGTKRASAFKPSGIQSMLKVISSHFRP 209

Query: 27  NRLE 16
            R E
Sbjct: 210 YRQE 213


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
 Frame = -2

Query: 548 AGRLENILYFFISSTCPTEVWR-----SIKRFRSAFKEXXXXXXXXXXLTNAFLDRLAPP 384
           A +L +ILY FI S  P +  R      IK FRS  +               FL+++ PP
Sbjct: 169 APQLASILYQFIFSAPPNDSMRMLQARGIKLFRSCLELIEIYKETKAEHVRVFLEQILPP 228


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 530 CFPAFLLFISEEFTCNTNNFIENI*VFIGHVRSIDSLSYLSFTYS 664
           C  +FL +I+  F C  N +   + V   H  SI +  Y+S+TYS
Sbjct: 372 CAMSFLFYIT--FYCWDNYYYSFLQVV--HYTSITAAGYISYTYS 412


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 450 FFES-RPKSFNTAPNFCRARRGDKEVQNVFQ 539
           F+ES RPK     P F    +G+ + +NVFQ
Sbjct: 359 FYESPRPKDPKFFPTFPSKAKGESKEKNVFQ 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,022
Number of Sequences: 5004
Number of extensions: 50677
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)