Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40338
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 36 0.031
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 33 0.29
11_04_0401 - 17251759-17252208,17252545-17253022,17254235-172542... 32 0.51
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 31 0.67
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 29 3.6
11_08_0026 + 27752519-27755441,27755538-27755923 29 3.6
07_03_0066 - 13011785-13011998,13012570-13012730,13013396-130134... 29 3.6
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606... 29 4.8
07_03_1631 - 28258897-28259984,28260518-28260772,28260861-282609... 29 4.8
08_02_0919 - 22627147-22627326,22627646-22627726,22627827-226281... 28 8.3
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 35.9 bits (79), Expect = 0.031
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = -1
Query: 186 INSVMVTGNIPETWKSQEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVKNRLEWFI 7
+ + +G +PE ++ I K ++P D+ YRPI+L +V+ KV + NRL +
Sbjct: 934 VRNFFQSGLMPEGVNDTAIVLIPKKDQPI-DLKDYRPISLCNVVYKVVSKCLVNRLRPIL 992
Query: 6 EN 1
++
Sbjct: 993 DD 994
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 32.7 bits (71), Expect = 0.29
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = -1
Query: 246 IMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWKSQEVIAIKKPNKPTNDVASYRPIAL 67
+ S + H G F +L +G E ++ I+KP K N V YRPI+L
Sbjct: 936 VQASTVQH-GTQLKRRFFSLATGFTTSGADIERINRAYIVLIQKPGKE-NTVDGYRPISL 993
Query: 66 SSVLTKVAEHLVKNRLE 16
+ K+ ++ RL+
Sbjct: 994 QNCSVKILSKVLATRLQ 1010
>11_04_0401 -
17251759-17252208,17252545-17253022,17254235-17254290,
17254489-17255019
Length = 504
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = -1
Query: 195 LNLINSVMVTGNIPETWKSQEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVKNRLE 16
+N + + TG P ++ I ++P D+ +RPI+L +V+ KV + NRL
Sbjct: 428 VNPVTKIFQTGLTPMGVNDTAIVLILMSDQPV-DLKDFRPISLCNVVYKVVFKCLVNRLR 486
Query: 15 WFIEN 1
+++
Sbjct: 487 TVLDD 491
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/38 (36%), Positives = 27/38 (71%)
Frame = -1
Query: 120 KKPNKPTNDVASYRPIALSSVLTKVAEHLVKNRLEWFI 7
+K + P + ++ +RPI+L +VL K+A ++ NRL+ F+
Sbjct: 176 RKVHNPEH-LSKFRPISLCNVLYKIASKVLANRLKLFL 212
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 237 SFLSHLGNSALMYFLNLINSVMVTGNIP 154
S HLGN + +Y LNL N+ +TG +P
Sbjct: 96 SITPHLGNLSFLYVLNLANT-SLTGTLP 122
>11_08_0026 + 27752519-27755441,27755538-27755923
Length = 1102
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -1
Query: 228 SHLGNSALMYFLNLINSVMVTGNIPE 151
SHLGN + + LNL N+ +TG++PE
Sbjct: 96 SHLGNLSFLSVLNLTNA-SLTGSVPE 120
>07_03_0066 -
13011785-13011998,13012570-13012730,13013396-13013464,
13014228-13014449
Length = 221
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 634 VYAADMSNENLDILNEVICITR 569
VYA D S E L+ NE++C T+
Sbjct: 158 VYACDCSKETLEKANEIVCSTK 179
>12_01_0991 -
10057736-10058249,10058412-10059241,10059266-10060633,
10061785-10062327,10066274-10066498,10066590-10066640
Length = 1176
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 563 EFTCNTNNFIENI*VFIGHVRSIDSLSYLSFTYSIHTFSIPP 688
+ +CN N+ + I VF+G S+ SL YL+ +Y S+PP
Sbjct: 405 DLSCNNFNWSQ-IPVFLG---SLPSLRYLNLSYGFFYGSVPP 442
>07_03_1631 -
28258897-28259984,28260518-28260772,28260861-28260975,
28261097-28261149,28261238-28261498,28262122-28262175,
28262294-28262536,28262830-28263073,28263877-28263909
Length = 781
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 547 QEGWKTFCTSLSPLRALQKFGAVLND 470
Q+ WK++C ++S L A Q FG V D
Sbjct: 11 QDQWKSYCRTIS-LLAFQSFGVVYGD 35
>08_02_0919 -
22627147-22627326,22627646-22627726,22627827-22628103,
22629451-22629755,22629835-22629987,22630318-22631076
Length = 584
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 629 IDSLSYLSFTYSIHTFSIPPW 691
I ++ +LS ++H FS+PPW
Sbjct: 494 ISTIEFLSKQCNLHQFSLPPW 514
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,466,850
Number of Sequences: 37544
Number of extensions: 287142
Number of successful extensions: 841
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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