Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40334
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 31 0.13
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 29 0.91
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 28 1.6
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 2.1
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 27 3.7
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 27 3.7
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 26 4.9
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 26 6.4
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.4
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 26 6.4
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 8.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.5
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.5
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 25 8.5
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 25 8.5
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 25 8.5
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 574 SESQLDSDNEDRRTHLSK--RKHLDSDDSDETYTPFAEQTSRKYTREKSNVP 723
+E + D D++D ++K +H++ DDS E + P E+ R+ + K+N P
Sbjct: 733 AELRGDEDDQDENDQVTKVEEEHMEDDDSVEEFDPIIEE--RQRMKRKANRP 782
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 28.7 bits (61), Expect = 0.91
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 541 KNNDYEPVTPKSESQLDSDNED----RRTHLSKRKHLDSDDSDETYTPFAEQTSRKYTRE 708
+N+ + + K + L + ED T SK +LDS+ +D++ + S+KYT +
Sbjct: 141 RNSRLQQLIEKKRNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLADESELSKKYTSD 200
Query: 709 K 711
+
Sbjct: 201 R 201
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 1.6
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +2
Query: 209 DRRRLL*CKNYFFPASEVENCDVFLPKLIDQCDDAVLQKEGMHKCERGLSIDVGIRTPSW 388
D RLL K Y FP + EN V K + + + L+KE L + TP+
Sbjct: 138 DMHRLLSYKGYTFPEIDKENLAVLSQKSVLKTAEE-LEKEDREAMSAKLQELIRRGTPAD 196
Query: 389 PADAISTPEVLSYVEQLEKEK 451
A+A +V++ + +K+K
Sbjct: 197 LAEANKLMKVMAGYDTEQKQK 217
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.5 bits (58), Expect = 2.1
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = +1
Query: 487 ASSKNGTNLNSVVNIIPCKNNDYEPVTPKSESQLDSDNEDRRTHLSKRKHLDSDDSDETY 666
+S + L+ V +PV+ +ES D D +D T S+ K + SDD + Y
Sbjct: 175 SSKLENSELSEVDKPFIASRRSRKPVS-YAESDEDEDFDDAPTKGSRHKRIVSDDESDDY 233
Query: 667 TPFAEQTSRKYTREKSNVPIKEM 735
E ++++PI E+
Sbjct: 234 ---VEPDHISEASSEASLPIDEV 253
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 280 KYITIFDFTGRKEIIFASQESSSVKGNVFC 191
K + I DFT + I + + +S + G++FC
Sbjct: 135 KQLEINDFTHKNHIAYIAADSRGLFGSIFC 164
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 517 SVVNIIPCKNNDYEPVTPKSESQL-DSDNEDRRTHLSKRKHLDSDDSDETYTPFAEQTSR 693
SVV + + P+ +S+S D N D+R H+S R+H S +++T + +S
Sbjct: 405 SVVATLASNSAQAHPMGQQSDSNYSDHHNNDKRAHVS-RRHSTSRKIAQSHTGSSSTSSA 463
Query: 694 KYTR 705
R
Sbjct: 464 ANVR 467
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 377 YEFLRQWKVLFRTCAFLLFVKLHHHTDR 294
+++ + W +F TC++LL HHH R
Sbjct: 21 WDWAKNW--VFWTCSYLLNFLYHHHCSR 46
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 574 SESQLDSD-NEDRRTHLSKRKHLDSDDSDETYTPFAEQTSRKYTREKSNVPI 726
SES+ D D +ED + + KRK +DD+ ++ A +Y +E+ N I
Sbjct: 247 SESESDEDEDEDNKGKIRKRK---TDDAKKSRKKRAPHIHIEYEQERENEKI 295
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 541 KNNDYEPVTPKSESQLDSDNEDRRTHLSKRKHLDSDD 651
+NN+ P P S S + D + KH DS+D
Sbjct: 82 RNNNVSPHIPSPSSFSSSSSSDLDKSMLDEKHPDSED 118
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 242 NNFCITRVVFGQGQCFLCVCVYSVICVECVGPVD 141
NN + + FG+G FL +Y+ C + G +D
Sbjct: 415 NNLFLKDLKFGEGDGFLNYYIYNYNCPKIPGGID 448
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +2
Query: 431 EQLEKEKCSRAFKELRND 484
+Q+EKE+ RA+K+ +ND
Sbjct: 721 KQMEKEEVPRAYKKTKND 738
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 496 KNGTNLNSVVNIIPCKNNDYEPVTPKSESQLDSDNEDRRTHLSKRKHLDSDDSDETYTPF 675
K G+ ++V+ + + +TP++ ++ DN HL RKHL ++ +T F
Sbjct: 3460 KPGSTFTNMVSNLITDARELMKLTPET---INDDNLSEIKHLKSRKHLLLTETFKTLKAF 3516
Query: 676 AEQ 684
Q
Sbjct: 3517 GLQ 3519
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 493 SKNGTNLNSVVNIIPCKNNDYEPVTPKSESQLDSDNEDRRTH 618
SKN + +N+I K+ Y+ +++ +D N+ + TH
Sbjct: 553 SKNWDLASKSINLIQKKSTMYDTNARANDTDVDFSNDKQNTH 594
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 57 LDISSLPVVIGGLTSAAALDD 119
LD+ SLP +G +T A +LDD
Sbjct: 87 LDVKSLPDPLGRVTYARSLDD 107
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 496 KNGTNLNSVVNIIPCKNNDYEPVTPKSESQLDSDNEDRRTHLSK 627
KNG+ L ++ + I N P KS ++ +EDR+ + K
Sbjct: 3 KNGSQLKNLKSSIRQANLGTRPNNKKSRTRSTESHEDRQAKVQK 46
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 598 NEDRRTHLSKRKHLDSDDSDETYTPFAEQT 687
+E+ H SK +DS + + T+ PF QT
Sbjct: 135 SEESEFHASKIAKIDSRNEEITHIPFETQT 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,173
Number of Sequences: 5004
Number of extensions: 65333
Number of successful extensions: 225
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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