Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40333
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1036 - 25587313-25587890,25589209-25589272,25589356-255894...    30   1.8  
11_06_0254 - 21721667-21721718,21722025-21722647                       30   1.8  
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           30   2.4  
12_02_0046 + 12830974-12832386                                         29   3.2  
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120...    29   3.2  
04_04_1129 - 31107892-31110246                                         29   3.2  
03_06_0715 + 35693002-35694585                                         29   3.2  
04_04_0317 + 24341389-24341504,24341532-24341973                       29   4.2  
11_06_0611 + 25461469-25461655,25461670-25462238                       29   5.6  
11_06_0610 - 25449085-25453284                                         29   5.6  
05_03_0373 - 13194723-13195847,13196219-13196809                       29   5.6  
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947...    28   7.4  
10_08_1048 - 22553676-22554866                                         28   7.4  
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342...    28   7.4  
07_03_1636 + 28290642-28291574                                         28   7.4  
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855...    28   9.8  
03_02_0076 - 5451137-5452503,5453439-5453866,5453949-5454046,545...    28   9.8  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   9.8  
01_06_0751 + 31690411-31690443,31692900-31694240                       28   9.8  

>12_02_1036 -
           25587313-25587890,25589209-25589272,25589356-25589448,
           25589533-25589683,25590474-25590539,25590594-25590907
          Length = 421

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +2

Query: 530 SEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPPGPATQLL 709
           +E P +  P PP  + AS     S P + LLR+   V          PP  PP PA  LL
Sbjct: 4   AEDPAKPPPPPPPQLEASG----SDPDDPLLRDRVVVIAPPPPP--PPPPPPPAPAPALL 57

Query: 710 L-SYAQQAQCTALAPPA 757
             +    A+     PPA
Sbjct: 58  APAENASAEAAFAVPPA 74


>11_06_0254 - 21721667-21721718,21722025-21722647
          Length = 224

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +2

Query: 551 DPQPPAAVLAS-SPFVTSQPTEELLREFETVYGAVELTHLTPPQSPPGPATQLLLSYAQQ 727
           DP  PA      S +V   P       +E VYG       T P + PG  +  +  +AQ+
Sbjct: 47  DPSSPAIHFGDGSGYVDPDPGHSFQAIYEQVYGDAYTWGTTSPATKPGVPSPPMSGFAQE 106

Query: 728 AQ 733
           A+
Sbjct: 107 AE 108


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
 Frame = +2

Query: 497 KS*PPSIFENISEVPE-RVDPQPPAAVLASSPFVTSQPT-EELLREFETVYGAVELTHLT 670
           +S PPS +     +P  +V P PP+A + S P +   P      +  ET++   +   + 
Sbjct: 287 QSQPPSQYPG--HLPHSQVPPVPPSAPVPSVPALPRDPYYAPPAQPTETMHQQYQAPPVP 344

Query: 671 PPQSPPGPATQL-----LLSYAQQAQCTALAPPAP 760
            PQ+PP P  Q         Y+Q  Q   + P  P
Sbjct: 345 QPQAPPAPPQQYQTPPQFPQYSQPPQSGMVNPSTP 379


>12_02_0046 + 12830974-12832386
          Length = 470

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
 Frame = +2

Query: 539 PERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPPGPATQL---- 706
           P RV PQP    L ++P   + P +       T   A  L    PP   P  A ++    
Sbjct: 238 PRRVAPQPAPPSLRTAPAAVAPPRQV---PVITQQQAPPLKRPAPPVPSPPCAKKIRGPV 294

Query: 707 LLSYAQQAQCTALAPPAPW 763
             S A +  C A + P PW
Sbjct: 295 SASPAARQSCVAASAPPPW 313


>07_01_0172 -
           1201595-1201912,1202637-1202723,1202836-1202895,
           1203007-1203106,1203227-1203633,1204728-1204883,
           1204981-1205106,1205503-1205572,1205679-1205767
          Length = 470

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 551 DPQPPAAVLAS--SPFVTSQPTEELLREFETVYGAVELTHL 667
           DP  PA V  S  SP +  QP  EL+RE  T+   +E+ HL
Sbjct: 78  DPDHPAPVNLSLESPMLKVQPANELIREVATL--ELEIKHL 116


>04_04_1129 - 31107892-31110246
          Length = 784

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +2

Query: 509 PSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEEL-LREFETV--YGAVELTHLTPPQ 679
           PS+   +S +P +  P P   +LA+S    S PT  L L  +  V  +       L PP+
Sbjct: 103 PSLSAALSALPSQ--PDPALLLLAASSLPASDPTPLLALVAWARVQPWFVPSDDTLLPPR 160

Query: 680 SPPGPATQLL 709
            PP P  QLL
Sbjct: 161 RPPRPGHQLL 170


>03_06_0715 + 35693002-35694585
          Length = 527

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 590 FVTSQPTEELLREFETVYGAVELTHLTPPQSPPGPATQLLLSYAQQAQ 733
           +V   P   +   +E VYG   +     P +PPG  +  +  +AQQA+
Sbjct: 66  YVDPDPGHSMQAIYEQVYGTPFVDARATPITPPGVPSPPMAGFAQQAE 113


>04_04_0317 + 24341389-24341504,24341532-24341973
          Length = 185

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 243 CGHRLLTNDECRLLLEVEDFFNDDCDLLK 329
           C HR++  D+ R L    D F++DCD+ K
Sbjct: 150 CQHRMVARDDVRTLSGGHD-FHEDCDIAK 177


>11_06_0611 + 25461469-25461655,25461670-25462238
          Length = 251

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 644 GAVELTHLTPPQSPPGPATQLLLSYAQQAQCTALAPPAPWNGRKKR 781
           GA  +  + PP+ PP P      S    A    +APP P  GR++R
Sbjct: 160 GAPTIHAVAPPRRPPPPRLPSRASPLAPAGSDGMAPP-PLPGRRRR 204


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 26/85 (30%), Positives = 32/85 (37%)
 Frame = +2

Query: 506  PPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSP 685
            PP     IS  P    P PPA V+   P V S P                +    PP+  
Sbjct: 1200 PPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPP------------PAPVISPPPPEKS 1247

Query: 686  PGPATQLLLSYAQQAQCTALAPPAP 760
            P PA  ++LS        +L PPAP
Sbjct: 1248 PPPAAPVILS---PPAVKSLPPPAP 1269


>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 431 VSEFGGTWFQLRR*WRVETRSVIDFDLRCSAR 336
           V+E G  + QL+R WR + R ++D D R   R
Sbjct: 502 VNEAGQRFLQLQREWRSDARGIVDGDGRFKFR 533


>12_01_0951 -
           9471391-9471597,9471857-9471966,9473173-9473278,
           9474719-9475060,9475598-9475647,9476745-9477717
          Length = 595

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 562 PGSGSSFKSFCDLAAH*RTAAGIRNGLWCCR 654
           P  GS   S C +     TA G+  GLWCCR
Sbjct: 397 PSCGSYTASACPIYVESGTA-GVVIGLWCCR 426


>10_08_1048 - 22553676-22554866
          Length = 396

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = +2

Query: 545 RVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAV-ELTHLTPPQSPPGPATQLLLSYA 721
           R    PP  +L  +        E+LLR+   +   V +L HL     PP P    LL Y+
Sbjct: 45  RASTAPP--LLLPAAHQAQAQDEQLLRQLTAIRATVSQLNHLRSSTPPPPPPPPELLLYS 102

Query: 722 QQAQCTALAPPAP 760
           + A   +     P
Sbjct: 103 RLAPLASACSAHP 115


>09_04_0489 -
           18031187-18031579,18032033-18034030,18034102-18034234,
           18035360-18036108
          Length = 1090

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 554 PQPPAAVLASSPFVTSQPTEELLREF--ETVYGAVELTHLTPPQSPPGPATQLLLSYAQQ 727
           P   +A  A +P    + +E  L  F  + ++   + +  +PPQ  P P  Q L++ A  
Sbjct: 77  PATASAAAAPAPAPADEDSENRLIAFHLQRLFAGEDPSFASPPQIAPQPQPQTLITPAIA 136

Query: 728 AQCTALAPPAP 760
           A  T  AP  P
Sbjct: 137 AAVTP-APSLP 146


>07_03_1636 + 28290642-28291574
          Length = 310

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 29/84 (34%), Positives = 32/84 (38%)
 Frame = +2

Query: 506 PPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSP 685
           PP +FE     P  V P P A +   SP   S P  +L             T   P   P
Sbjct: 155 PPQLFETAPPSPPYVPPPPDAYLRKPSP--PSPPPAKLSPP------PPPQTQTQPLAKP 206

Query: 686 PGPATQLLLSYAQQAQCTALAPPA 757
           P PAT    S A      ALAPPA
Sbjct: 207 PAPATP---SRA-GGHVAALAPPA 226


>06_03_0077 +
           16284106-16284128,16284552-16284795,16285490-16285591,
           16286347-16287057
          Length = 359

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 644 GAVELTHLTPPQSP-PGP-ATQLLLSYAQQAQCTALAPPAPWNGRKKRGR 787
           GA     + PP+SP   P ATQL  ++A  A  TA   PAP   R + GR
Sbjct: 128 GARHQVLVRPPRSPREDPMATQLSATFAPAATTTATPLPAP-QQRLRHGR 176


>03_02_0076 -
           5451137-5452503,5453439-5453866,5453949-5454046,
           5454723-5454836,5455017-5455111,5455222-5455283,
           5455398-5455557,5456247-5456643
          Length = 906

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = +2

Query: 548 VDPQPPAAVLASSPFVTSQPTEELLREFETVYGAV--ELTH----LTPPQSPPGPATQLL 709
           VD   PAA+L  + F TS   EELL     +Y ++   L H    ++  QS    A+ ++
Sbjct: 292 VDAYQPAALLFCTSFETSYGVEELLNTLPRLYDSLLPSLLHGFQVMSSSQSNGETASDII 351

Query: 710 LS 715
           LS
Sbjct: 352 LS 353


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = +2

Query: 506 PPSI--FENISEVPERVDPQP---PAAVLAS-SPFVTSQPTEELLREFETVYGAVELTHL 667
           PPS      +S VP R  P P   PAA  AS SP +   P  E     +++  A   +  
Sbjct: 254 PPSTPAITAVSSVP-RSSPSPAPAPAARPASPSPSLPLPPGRESPSRPQSIAAAAVASPA 312

Query: 668 TPPQSPPGPA 697
            PP  PP PA
Sbjct: 313 PPPPPPPKPA 322


>01_06_0751 + 31690411-31690443,31692900-31694240
          Length = 457

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 527 ISEVPERVD-PQPPAAVLASSPFVTSQPT 610
           I E+P+R + P PPAA     P  T Q T
Sbjct: 195 IDELPDRAEAPPPPAAASTEQPEATEQAT 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,035,592
Number of Sequences: 37544
Number of extensions: 436735
Number of successful extensions: 1527
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)