Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40332
(741 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VZS3 Cluster: Protein translation factor SUI1 homolog... 92 1e-17
UniRef50_O60739 Cluster: Eukaryotic translation initiation facto... 81 4e-14
UniRef50_P41567 Cluster: Eukaryotic translation initiation facto... 79 1e-13
UniRef50_UPI0000DD7914 Cluster: PREDICTED: similar to suppressor... 69 1e-10
UniRef50_Q94JV4 Cluster: Protein translation factor SUI1 homolog... 60 7e-08
UniRef50_Q6MVC9 Cluster: Probable translation initiation factor ... 55 2e-06
UniRef50_A6SQI8 Cluster: Translation initiation factor 3; n=15; ... 55 2e-06
UniRef50_Q7XN79 Cluster: OSJNBa0089N06.3 protein; n=6; Oryza sat... 54 4e-06
UniRef50_Q00RG6 Cluster: H0303G06.6 protein; n=2; Oryza sativa|R... 54 4e-06
UniRef50_Q5CLR9 Cluster: Translation initiation factor SUI1; n=2... 52 1e-05
UniRef50_Q38LF1 Cluster: Eukaryotic translation initiation facto... 51 3e-05
UniRef50_Q00T99 Cluster: Translation initiation factor SUI1, put... 50 6e-05
UniRef50_Q40537 Cluster: Nicotiana tabacum (clone 12) activating... 42 0.012
UniRef50_Q86AU4 Cluster: Similar to translation initiation facto... 42 0.012
UniRef50_A7ES43 Cluster: Predicted protein; n=1; Sclerotinia scl... 39 0.11
UniRef50_Q4QAL1 Cluster: Translation factor SUI1, putative; n=5;... 39 0.15
UniRef50_UPI000150A7AF Cluster: Translation initiation factor SU... 38 0.34
UniRef50_Q5KLG3 Cluster: Suppressor of initiator codon mutations... 38 0.34
UniRef50_A0CXT2 Cluster: Chromosome undetermined scaffold_30, wh... 35 1.8
UniRef50_UPI0000498D7F Cluster: Translation initiation factor; n... 35 2.4
UniRef50_Q4TGS9 Cluster: Chromosome undetermined SCAF3502, whole... 33 5.6
UniRef50_Q6IJH6 Cluster: HDC14891; n=1; Drosophila melanogaster|... 33 7.4
>UniRef50_Q9VZS3 Cluster: Protein translation factor SUI1 homolog;
n=11; Bilateria|Rep: Protein translation factor SUI1
homolog - Drosophila melanogaster (Fruit fly)
Length = 110
Score = 92.3 bits (219), Expect = 1e-17
Identities = 39/43 (90%), Positives = 41/43 (95%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 456
GTV+EHPEYGEVLQLQGDQRENICQWLTK GL KP+QLKVHGF
Sbjct: 68 GTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110
Score = 81.4 bits (192), Expect = 2e-14
Identities = 36/42 (85%), Positives = 40/42 (95%)
Frame = +3
Query: 129 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLT 254
MSIQNLNT DPFADAIK ++DD+QDGLVH+RIQQRNGRKTLT
Sbjct: 1 MSIQNLNTRDPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLT 42
Score = 50.0 bits (114), Expect = 6e-05
Identities = 21/24 (87%), Positives = 24/24 (100%)
Frame = +2
Query: 254 SVQGLSSEYDLKKIVRACKKEFAC 325
+VQGLS+EYDLKKIVR+CKKEFAC
Sbjct: 43 TVQGLSAEYDLKKIVRSCKKEFAC 66
>UniRef50_O60739 Cluster: Eukaryotic translation initiation factor
1b; n=44; Fungi/Metazoa group|Rep: Eukaryotic
translation initiation factor 1b - Homo sapiens (Human)
Length = 113
Score = 80.6 bits (190), Expect = 4e-14
Identities = 34/43 (79%), Positives = 40/43 (93%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 456
GTV+EHPEYGEV+QLQGDQR+NICQ+L + G+VK EQLKVHGF
Sbjct: 71 GTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
Score = 52.4 bits (120), Expect = 1e-05
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Frame = +3
Query: 132 SIQNLNTFDPFADAIKSSE--DDVQDGLVHVRIQQRNGRKTLT 254
+IQNL +FDPFADA K + + +H+RIQQRNGRKTLT
Sbjct: 3 TIQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLT 45
Score = 37.1 bits (82), Expect = 0.45
Identities = 14/24 (58%), Positives = 21/24 (87%)
Frame = +2
Query: 254 SVQGLSSEYDLKKIVRACKKEFAC 325
+VQG++ +YD KK+V+A KK+FAC
Sbjct: 46 TVQGIADDYDKKKLVKAFKKKFAC 69
>UniRef50_P41567 Cluster: Eukaryotic translation initiation factor
1; n=53; Eukaryota|Rep: Eukaryotic translation
initiation factor 1 - Homo sapiens (Human)
Length = 113
Score = 79.0 bits (186), Expect = 1e-13
Identities = 33/43 (76%), Positives = 39/43 (90%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 456
GTV+EHPEYGEV+QLQGDQR+NICQ+L + GL K +QLKVHGF
Sbjct: 71 GTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
Score = 52.4 bits (120), Expect = 1e-05
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Frame = +3
Query: 132 SIQNLNTFDPFADAIKSSE--DDVQDGLVHVRIQQRNGRKTLT 254
+IQNL++FDPFADA K + + +H+RIQQRNGRKTLT
Sbjct: 3 AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLT 45
Score = 37.1 bits (82), Expect = 0.45
Identities = 14/24 (58%), Positives = 21/24 (87%)
Frame = +2
Query: 254 SVQGLSSEYDLKKIVRACKKEFAC 325
+VQG++ +YD KK+V+A KK+FAC
Sbjct: 46 TVQGIADDYDKKKLVKAFKKKFAC 69
>UniRef50_UPI0000DD7914 Cluster: PREDICTED: similar to suppressor of
initiator codon mutations, related sequence 1; n=1; Homo
sapiens|Rep: PREDICTED: similar to suppressor of
initiator codon mutations, related sequence 1 - Homo
sapiens
Length = 288
Score = 68.9 bits (161), Expect = 1e-10
Identities = 30/43 (69%), Positives = 35/43 (81%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 456
GTV+EHPEYGEV+Q QGDQ NICQ+L + GL K +QLKVH F
Sbjct: 246 GTVIEHPEYGEVIQPQGDQCNNICQFLVELGLAKDDQLKVHVF 288
Score = 55.2 bits (127), Expect = 2e-06
Identities = 27/57 (47%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Frame = +3
Query: 90 SVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSE--DDVQDGLVHVRIQQRNGRKTLT 254
+VS ++++ ++ + +IQNL++FDPFADA K + + +H+RIQQRNGRKTLT
Sbjct: 166 AVSTEEKE-SYCKFAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLT 221
>UniRef50_Q94JV4 Cluster: Protein translation factor SUI1 homolog 2;
n=42; Eukaryota|Rep: Protein translation factor SUI1
homolog 2 - Arabidopsis thaliana (Mouse-ear cress)
Length = 113
Score = 59.7 bits (138), Expect = 7e-08
Identities = 24/43 (55%), Positives = 35/43 (81%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 456
GTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 71 GTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
Score = 43.6 bits (98), Expect = 0.005
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +3
Query: 129 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLT 254
+ +Q FDPFADA VH+R+QQRNGRK+LT
Sbjct: 4 LEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLT 45
>UniRef50_Q6MVC9 Cluster: Probable translation initiation factor
SUI1; n=2; Neurospora crassa|Rep: Probable translation
initiation factor SUI1 - Neurospora crassa
Length = 117
Score = 55.2 bits (127), Expect = 2e-06
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Frame = +3
Query: 129 MSIQNLNTFDPFADAIK--SSEDDVQDGLVHVRIQQRNGRKTLTRCKAFPR 275
MSI+NL T+DPFA+A + S + +H+RIQQRNGRKTLT + P+
Sbjct: 1 MSIENLKTYDPFAEADEEDSGQTKQTQEYIHIRIQQRNGRKTLTTVQGIPK 51
Score = 37.5 bits (83), Expect = 0.34
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Frame = +1
Query: 328 GTVV--EHPEYGEVLQLQGDQRENICQWLTK--SGL-VKPEQLKVHGF 456
GT++ E + G+V+QLQGDQR I +LT GL + + +KVHGF
Sbjct: 70 GTIIGDEDSKMGDVIQLQGDQRAKIKDFLTNKDEGLGLDAKTIKVHGF 117
Score = 34.7 bits (76), Expect = 2.4
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 254 SVQGLSSEYDLKKIVRACKKEFAC 325
+VQG+ ++D KKI++ KKEFAC
Sbjct: 45 TVQGIPKKFDAKKILKVVKKEFAC 68
>UniRef50_A6SQI8 Cluster: Translation initiation factor 3; n=15;
Pezizomycotina|Rep: Translation initiation factor 3 -
Botryotinia fuckeliana B05.10
Length = 169
Score = 54.8 bits (126), Expect = 2e-06
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +3
Query: 135 IQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTRCKAFPR 275
I+NL FDPFA+A + D +H+RIQQRNGRKTLT + P+
Sbjct: 60 IENLKVFDPFAEADEEPGDQKAAEYIHIRIQQRNGRKTLTTVQGLPK 106
Score = 44.4 bits (100), Expect = 0.003
Identities = 22/45 (48%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLT-KSGL-VKPEQLKVHGF 456
GT+V G+V+QLQGDQR+++ ++LT K GL ++ + +KVHGF
Sbjct: 125 GTIVNDVIMGDVIQLQGDQRKDVQEFLTGKDGLELEAKTIKVHGF 169
Score = 33.5 bits (73), Expect = 5.6
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 254 SVQGLSSEYDLKKIVRACKKEFAC 325
+VQGL ++D KKI++ KK+FAC
Sbjct: 100 TVQGLPKKFDQKKILKVIKKKFAC 123
>UniRef50_Q7XN79 Cluster: OSJNBa0089N06.3 protein; n=6; Oryza
sativa|Rep: OSJNBa0089N06.3 protein - Oryza sativa
(Rice)
Length = 580
Score = 54.0 bits (124), Expect = 4e-06
Identities = 21/43 (48%), Positives = 32/43 (74%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 456
G VVE E G+++QLQGD R ++ +L K+G+V+ + +KVHGF
Sbjct: 538 GNVVEDKELGKIIQLQGDHRNSVSDFLAKAGMVRKDNIKVHGF 580
Score = 34.3 bits (75), Expect = 3.2
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 210 VHVRIQQRNGRKTLT 254
VHVR+QQRNGRKTLT
Sbjct: 498 VHVRVQQRNGRKTLT 512
>UniRef50_Q00RG6 Cluster: H0303G06.6 protein; n=2; Oryza sativa|Rep:
H0303G06.6 protein - Oryza sativa (Rice)
Length = 241
Score = 54.0 bits (124), Expect = 4e-06
Identities = 21/43 (48%), Positives = 32/43 (74%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 456
G VVE E G+++QLQGD R ++ +L K+G+V+ + +KVHGF
Sbjct: 199 GNVVEDKELGKIIQLQGDHRNSVSDFLAKAGMVRKDNIKVHGF 241
Score = 37.9 bits (84), Expect = 0.26
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +3
Query: 150 TFDPFADAI---KSSEDDVQDGLVHVRIQQRNGRKTLT 254
TFD FADA ++ VHVR+QQRNGRKTLT
Sbjct: 136 TFDAFADAEGEDAAAGRGAGGDYVHVRVQQRNGRKTLT 173
>UniRef50_Q5CLR9 Cluster: Translation initiation factor SUI1; n=2;
Cryptosporidium|Rep: Translation initiation factor SUI1
- Cryptosporidium hominis
Length = 112
Score = 52.0 bits (119), Expect = 1e-05
Identities = 17/42 (40%), Positives = 31/42 (73%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 453
GT+++ PE+G +LQ+QGD R N+ ++L +V +++K+HG
Sbjct: 70 GTIIDDPEHGPILQIQGDHRHNVARFLVGENIVNSDEIKIHG 111
Score = 37.5 bits (83), Expect = 0.34
Identities = 14/24 (58%), Positives = 22/24 (91%)
Frame = +2
Query: 254 SVQGLSSEYDLKKIVRACKKEFAC 325
+VQGLS+E+DLK++++A KK F+C
Sbjct: 45 TVQGLSAEFDLKRLLKAFKKNFSC 68
>UniRef50_Q38LF1 Cluster: Eukaryotic translation initiation factor
1; n=9; Apicomplexa|Rep: Eukaryotic translation
initiation factor 1 - Toxoplasma gondii
Length = 163
Score = 50.8 bits (116), Expect = 3e-05
Identities = 18/42 (42%), Positives = 31/42 (73%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 453
GTV+E PE+G ++QLQGDQR + ++L + + +Q+++HG
Sbjct: 121 GTVIEDPEHGSIIQLQGDQRHAVKEFLEREAICSVDQIRIHG 162
Score = 36.3 bits (80), Expect = 0.79
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2
Query: 254 SVQGLSSEYDLKKIVRACKKEFAC 325
+VQGL DLKK+VRA KK+F+C
Sbjct: 96 TVQGLDKSLDLKKMVRALKKQFSC 119
>UniRef50_Q00T99 Cluster: Translation initiation factor SUI1,
putative; n=1; Ostreococcus tauri|Rep: Translation
initiation factor SUI1, putative - Ostreococcus tauri
Length = 129
Score = 50.0 bits (114), Expect = 6e-05
Identities = 21/42 (50%), Positives = 30/42 (71%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 453
G +VE E+G+++QLQGDQR+NI Q+L + K +KVHG
Sbjct: 86 GCIVEDSEHGDIVQLQGDQRKNIAQFLVDERISKKALIKVHG 127
Score = 36.3 bits (80), Expect = 0.79
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 189 DDVQDGLVHVRIQQRNGRKTLT 254
D VQ +H+R+QQRNGRK+LT
Sbjct: 39 DSVQGNYIHIRMQQRNGRKSLT 60
>UniRef50_Q40537 Cluster: Nicotiana tabacum (clone 12) activating
factor DNA sequence; n=1; Nicotiana tabacum|Rep:
Nicotiana tabacum (clone 12) activating factor DNA
sequence - Nicotiana tabacum (Common tobacco)
Length = 81
Score = 42.3 bits (95), Expect = 0.012
Identities = 20/42 (47%), Positives = 29/42 (69%)
Frame = +3
Query: 129 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLT 254
+ +Q + FDPFA+A S ++ VH+RIQQRNG+K+LT
Sbjct: 35 IDVQIPSAFDPFAEAKDSGAPGAKE-YVHIRIQQRNGKKSLT 75
>UniRef50_Q86AU4 Cluster: Similar to translation initiation factor 3
(EIF3); Sui1p; n=2; Dictyostelium discoideum|Rep:
Similar to translation initiation factor 3 (EIF3); Sui1p
- Dictyostelium discoideum (Slime mold)
Length = 110
Score = 42.3 bits (95), Expect = 0.012
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = +3
Query: 132 SIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTRCKAFPRNMT*RRSCGH 305
SIQNLN+ DPFA+ D VH+RI QR+GRK +T + P + ++ H
Sbjct: 3 SIQNLNSADPFAEDSNLGGDS-GISYVHIRIFQRSGRKAVTTVEGLPPKIDLKKILKH 59
Score = 41.1 bits (92), Expect = 0.028
Identities = 15/51 (29%), Positives = 31/51 (60%)
Frame = +1
Query: 304 MQEGVRVQGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 456
+++ + G +VE G +++LQGD+R+ I +L + + + +K+HGF
Sbjct: 60 LKKSLNCNGNIVEEENLGMIIKLQGDKRKEIALFLIEEKISQKPSIKIHGF 110
>UniRef50_A7ES43 Cluster: Predicted protein; n=1; Sclerotinia
sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
sclerotiorum 1980
Length = 165
Score = 39.1 bits (87), Expect = 0.11
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Frame = +1
Query: 331 TVVEHPEYGEVLQLQGDQRENICQWL-TKSGL-VKPEQLKVHG 453
++VE +GEV+Q+QGD R+ I ++L TK GL + E + VHG
Sbjct: 123 SIVEDKVFGEVIQIQGDYRQKIYEFLTTKDGLELDEENVVVHG 165
Score = 36.3 bits (80), Expect = 0.79
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +2
Query: 167 RCYQKLGGRRSRWFSPRPYPATKRA*DADSVQGLSSEYDLKKIVRACKKEFAC 325
RC Q+ GGR R + P +VQGL +++KK+V+A KK+FAC
Sbjct: 74 RC-QQTGGRPKRNMEGKKKPHM-----LTTVQGLPDRFNMKKVVKAFKKKFAC 120
>UniRef50_Q4QAL1 Cluster: Translation factor SUI1, putative; n=5;
Trypanosomatidae|Rep: Translation factor SUI1, putative
- Leishmania major
Length = 107
Score = 38.7 bits (86), Expect = 0.15
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVH 450
GTV+ P+ G V+QLQG+ ENI Q+L + L++H
Sbjct: 65 GTVISTPDAGTVIQLQGNWSENIKQFLLDEHMATENNLEIH 105
>UniRef50_UPI000150A7AF Cluster: Translation initiation factor SUI1
family protein; n=1; Tetrahymena thermophila SB210|Rep:
Translation initiation factor SUI1 family protein -
Tetrahymena thermophila SB210
Length = 101
Score = 37.5 bits (83), Expect = 0.34
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 331 TVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 453
T+VE E +V++L GD R I Q+L++ G+ + + +HG
Sbjct: 60 TIVEEDEGKKVIKLNGDHRNQIQQFLSEEGIAAVDNITIHG 100
>UniRef50_Q5KLG3 Cluster: Suppressor of initiator codon mutations,
putative; n=1; Filobasidiella neoformans|Rep: Suppressor
of initiator codon mutations, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 159
Score = 37.5 bits (83), Expect = 0.34
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Frame = +3
Query: 135 IQNLN-TFDPFADA-----IKSSEDDV--QDGLVHVRIQQRNGRKTLTRCKAFP 272
++NL FDPFA S E V ++ +H+R+QQRNGRKTLT + P
Sbjct: 26 VENLGPAFDPFAPVNDLNDTPSIEKAVGSKNDKIHIRLQQRNGRKTLTTVQGIP 79
Score = 35.9 bits (79), Expect = 1.0
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Frame = +1
Query: 352 YGEVLQLQGDQRENICQWLTKSGLVKPEQLK----VHGF 456
+G+VLQLQGDQR Q+L SG+V ++ K VHG+
Sbjct: 121 HGDVLQLQGDQRVAAKQFLIDSGIVAQKEAKDLIVVHGY 159
Score = 34.7 bits (76), Expect = 2.4
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2
Query: 254 SVQGLSSEYDLKKIVRACKKEFAC 325
+VQG+ S+Y+ KI++A KKEFAC
Sbjct: 74 TVQGIPSKYNHSKILKAMKKEFAC 97
>UniRef50_A0CXT2 Cluster: Chromosome undetermined scaffold_30, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_30,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 107
Score = 35.1 bits (77), Expect = 1.8
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 328 GTVVEHPEYGE--VLQLQGDQRENICQWLTKSGLVKPEQLKVHG 453
G + + +YG+ ++L GD R+ I ++L + G+ + +KVHG
Sbjct: 63 GIISKDEDYGDQVTIRLTGDNRQQIAKFLVEEGIALQDNIKVHG 106
>UniRef50_UPI0000498D7F Cluster: Translation initiation factor; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Translation
initiation factor - Entamoeba histolytica HM-1:IMSS
Length = 110
Score = 34.7 bits (76), Expect = 2.4
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 355 GEV-LQLQGDQRENICQWLTKSGLVKPEQLKVHGF 456
GEV +L GDQR+ + G++ PE +K+HGF
Sbjct: 76 GEVEFKLSGDQRKAASNFFLAEGILLPENIKIHGF 110
>UniRef50_Q4TGS9 Cluster: Chromosome undetermined SCAF3502, whole
genome shotgun sequence; n=3; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF3502,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 399
Score = 33.5 bits (73), Expect = 5.6
Identities = 21/64 (32%), Positives = 27/64 (42%)
Frame = -2
Query: 356 PYSGCSTTVPCTRTPSCMPARSSSGHIPRKGLAPSQRLTPVSLLDTDVD*TILNVVLRAF 177
P++ T CTR+ C P + G P P+SLLD LN VL AF
Sbjct: 222 PWTSSRRTWTCTRSWPCPPCWAGPSPPMAPGAQPGTLQPPMSLLDFQPLACFLNNVLSAF 281
Query: 176 DSIG 165
+ G
Sbjct: 282 NDCG 285
>UniRef50_Q6IJH6 Cluster: HDC14891; n=1; Drosophila
melanogaster|Rep: HDC14891 - Drosophila melanogaster
(Fruit fly)
Length = 183
Score = 33.1 bits (72), Expect = 7.4
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 554 RAPTSTEKREHGCPRPVPCEFLCCIKYCKSYILSPPSR---LISCKIINR 694
R P+S+E HGC P CE+L + +S + P +R L+SC N+
Sbjct: 90 RLPSSSEP--HGCEYPYECEYLLLLLVSRSVLSHPHTRTNILLSCSSWNK 137
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,579,805
Number of Sequences: 1657284
Number of extensions: 14091374
Number of successful extensions: 39388
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 36864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39347
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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