Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40332
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo...    57   2e-09
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    32   0.099
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    28   1.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.7  
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    26   4.9  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   8.6  

>SPBC23G7.05 |sui1|psu1|translation initiation factor
           eIF1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = +3

Query: 132 SIQNLNTFDPFADAIKSSEDDVQD-GLVHVRIQQRNGRKTLTRCKAFPRNMT*RR 293
           +IQN NT DPFAD   + +DD Q    +H+RIQQRNGRKTLT  +  PR    +R
Sbjct: 3   AIQNFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKR 54



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 19/43 (44%), Positives = 32/43 (74%)
 Frame = +1

Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 456
           GT+V+  + GEV+QLQGDQR  + ++LT+   ++ + +K+HGF
Sbjct: 67  GTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +2

Query: 254 SVQGLSSEYDLKKIVRACKKEFAC 325
           +VQGL  E+D K+I+RA KK+FAC
Sbjct: 42  TVQGLPREFDQKRILRALKKDFAC 65


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 31.9 bits (69), Expect = 0.099
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 371 SCSTSPYSGCSTTVPCTRTPSCMPARSSSGHIPRKGLAPS-QRLTP 237
           SCS  PY   S T    RTPS +   SS    P+  L+PS + LTP
Sbjct: 205 SCSPEPYLPLSPTRSPARTPSPIRLYSSDALRPQSPLSPSVEYLTP 250


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 191 VLRAFDSIGEWVECVEILDGHTIERRVSLFQR 96
           +LR   S+  W+  ++  +G T+E+RV LF+R
Sbjct: 25  LLRDPYSLKSWLRYIKTHEGSTLEKRVLLFER 56


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 330  TLHANSFLHARTIFFRSYSEERPCTESASYARFVAGYGRGLNHLERRP 187
            T  ANSF  + +  F+   +     ++ S  +F+ G+G+G+  L  +P
Sbjct: 2795 TAGANSFYDSMSSGFKGLKKPFTDPKNNSAGKFLKGFGKGMLGLATKP 2842


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = +1

Query: 253 LGARPFLGI*PEEDRAGMQEGVRVQGTVVEH-PEYGEVL-----QLQGDQRENICQWLTK 414
           + A P   +     RAG +  V V G++VEH P + ++L     +L GD  + I   + K
Sbjct: 374 MSAVPIASLYLSTGRAGKKSDVGVDGSLVEHYPHFVDMLREALRELIGDNEKLISIGIAK 433

Query: 415 SG 420
            G
Sbjct: 434 DG 435


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 552 REHRRLQRKENTVVRALCLANSSVV*NIVNLIYYRRRL 665
           R  +R   K  T   A C++N+ +V N  +  YY R L
Sbjct: 24  RYSKRPNHKLGTAEYAECMSNAPIVFNRFDASYYTRNL 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,603
Number of Sequences: 5004
Number of extensions: 59548
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)