Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40332
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 64 1e-10
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942... 61 1e-09
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 54 1e-07
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451... 43 2e-04
04_04_1325 + 32666302-32667633 30 2.2
07_01_1212 + 11560247-11560684,11560773-11560826,11560926-115609... 29 3.9
03_05_1088 + 30301654-30303480 29 3.9
01_01_0384 - 2970369-2970726,2970812-2970882,2971428-2971509,297... 29 3.9
01_06_1413 + 37149038-37149295,37149392-37149603,37149687-371499... 29 5.1
07_01_1071 - 9525734-9525875,9526044-9526117 28 6.8
02_01_0323 - 2201294-2202337 28 6.8
01_01_0131 - 1186129-1186242,1186640-1186720,1186843-1186993,118... 28 9.0
>07_03_0685 -
20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 63.7 bits (148), Expect = 1e-10
Identities = 25/43 (58%), Positives = 36/43 (83%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 456
GTVV+ PE G+V+QLQGDQR+N+ +L ++G+VK E +K+HGF
Sbjct: 798 GTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 840
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +3
Query: 129 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTRCKAFPRNMT 284
+ IQ FDPFA+A + + G VHVRIQQRNGRK+LT + + +
Sbjct: 729 LDIQIPTAFDPFAEA-NAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFS 782
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 254 SVQGLSSEYDLKKIVRACKKEFAC 325
+VQGL E+ KI++ KKEF C
Sbjct: 773 TVQGLKKEFSYNKILKDLKKEFCC 796
>05_05_0359 +
24393254-24393260,24393952-24394163,24394243-24394296,
24394400-24394444
Length = 105
Score = 60.9 bits (141), Expect = 1e-09
Identities = 23/43 (53%), Positives = 35/43 (81%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 456
GTVV+ PE G+V+QLQGDQR+N+ +L ++G+ K + +K+HGF
Sbjct: 63 GTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 105
Score = 35.9 bits (79), Expect = 0.034
Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = +3
Query: 156 DPFADAIKSSEDDVQDGL---VHVRIQQRNGRKTLT 254
DPFA+A + + G VHVRIQQRNGRK+LT
Sbjct: 3 DPFAEA-NAEDSGAGPGAKDYVHVRIQQRNGRKSLT 37
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 254 SVQGLSSEYDLKKIVRACKKEFAC 325
+VQGL EY KI++ KKEF C
Sbjct: 38 TVQGLKKEYSYNKILKDLKKEFCC 61
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/43 (48%), Positives = 32/43 (74%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 456
G VVE E G+++QLQGD R ++ +L K+G+V+ + +KVHGF
Sbjct: 538 GNVVEDKELGKIIQLQGDHRNSVSDFLAKAGMVRKDNIKVHGF 580
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 210 VHVRIQQRNGRKTLT 254
VHVR+QQRNGRKTLT
Sbjct: 498 VHVRVQQRNGRKTLT 512
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 254 SVQGLSSEYDLKKIVRACKKEFAC 325
+VQG+ EY+ K++R K+E C
Sbjct: 513 TVQGIGGEYNYAKVLRDLKRELCC 536
>01_06_0992 -
33644712-33644726,33644769-33644822,33644915-33645126,
33645436-33645472
Length = 105
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +1
Query: 328 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLV 426
GTVV+ PE G+V+QLQGDQR+N+ +L + +
Sbjct: 73 GTVVQDPELGQVIQLQGDQRKNVATFLVQIAFI 105
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Frame = +3
Query: 129 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLT 254
+ +Q + FDPFA+A + + V G VHVRIQQRNGRK+LT
Sbjct: 4 LDVQLPSAFDPFAEA-NAEDSSVGAGSKDYVHVRIQQRNGRKSLT 47
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 254 SVQGLSSEYDLKKIVRACKKEFAC 325
+VQGL EY KI++ KKEF C
Sbjct: 48 TVQGLKKEYSYNKILKDLKKEFCC 71
>04_04_1325 + 32666302-32667633
Length = 443
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = -2
Query: 527 IITTRNPHN--TMLSVDMLCLSRAA*KPCTLSCSGFTKPDLVSHWQIFSRWSP*SCSTSP 354
++ + N H +L V RA KPCT + + +P++++ W++ + P
Sbjct: 68 MMKSENDHTGQALLHVQEAAAKRAVIKPCTPTLTPPNEPEVINAWELMAGLE----DDPP 123
Query: 353 YSGCSTTVPCTRTPSCMPA 297
C++ P TP M A
Sbjct: 124 TPPCASHEPPAVTPQWMQA 142
>07_01_1212 +
11560247-11560684,11560773-11560826,11560926-11560985,
11561084-11561227
Length = 231
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 365 STSPYSGCSTTVPCTRTPSCMPARSSSGHIPRKGLAPSQRLTP 237
ST+P G ++ P PS PA + P G+APS +P
Sbjct: 60 STAPAFGTPSSTPAFGAPSSTPAFGAPFSTPAFGVAPSPSPSP 102
>03_05_1088 + 30301654-30303480
Length = 608
Score = 29.1 bits (62), Expect = 3.9
Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 2/107 (1%)
Frame = -2
Query: 476 CLSRAA*KPCTLSCSGFTKPDLVSH-WQIFSRWSP*SCSTSPYSGCSTTVPCTRTPSCMP 300
C A C + SG+ K + F + Y+ + C R +
Sbjct: 188 CAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGVDQYTAVALLACCGRLKKAVL 247
Query: 299 ARSSSGHIPRK-GLAPSQRLTPVSLLDTDVD*TILNVVLRAFDSIGE 162
RS G + R+ G+A + +LLD +N +R FD GE
Sbjct: 248 GRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMRVFDEAGE 294
>01_01_0384 -
2970369-2970726,2970812-2970882,2971428-2971509,
2971757-2971818,2972308-2972401,2972502-2972569,
2972681-2972747,2972830-2972960,2973093-2973200,
2973577-2973642,2973706-2973774,2973990-2974115,
2974167-2974284,2974741-2974847,2975889-2976009,
2976162-2976235,2976955-2977051,2977564-2977679,
2978218-2978313,2978426-2978635,2979101-2979253
Length = 797
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = -1
Query: 444 LELFRLH*AGFGEPLANILSLVALKLQHLAVLRVLHDRTLHANSFLHARTIFFRSYSEER 265
L+L + H + F E L+ + + + +LAVL+ T H N L +T +S EE
Sbjct: 542 LKLTKYHLSTFKEILSPSIERICTYVDNLAVLQSRDVSTEHDNEELSEKTSPQKSLEEEY 601
Query: 264 PCTESASYARFVAGYGR 214
TE A + + R
Sbjct: 602 LETEKKGCAEHIVVHSR 618
>01_06_1413 +
37149038-37149295,37149392-37149603,37149687-37149951,
37150099-37150407
Length = 347
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 80 VVSQRFVETKRPYVQSYVHPESQHI 154
V +QR+V K P+V+ + HPE H+
Sbjct: 299 VEAQRYVAEKLPWVRYHEHPEGGHL 323
>07_01_1071 - 9525734-9525875,9526044-9526117
Length = 71
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 344 CSTTVPCTRTPSCM-PARSSSGHIPRKGLAPSQRLTPVSLLDTD 216
CS +R PSC+ ARSS +I R+ P+ TP L D
Sbjct: 3 CSELHGPSRRPSCLLSARSSRRNIDRQRRHPAAAATPTESLTAD 46
>02_01_0323 - 2201294-2202337
Length = 347
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 119 VQSYVHPESQHIRPIRRCYQKLGGRRSRWFSPRPYPATKRA*DADSVQ 262
V+ +VH + P R Y R+F PRP P A AD+V+
Sbjct: 3 VRRFVHLVLEEFAPRRSNYTLRNIDMDRFFLPRPSPVPSAAAAADAVE 50
>01_01_0131 -
1186129-1186242,1186640-1186720,1186843-1186993,
1187100-1187167,1187323-1187438,1188108-1188366
Length = 262
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/77 (25%), Positives = 32/77 (41%)
Frame = +1
Query: 373 QGDQRENICQWLTKSGLVKPEQLKVHGF*AALLRHNMSTLNIVL*GLRVVIINPIKNMYL 552
+GD IC K G P+QL +G R N L +++ + P + ++
Sbjct: 115 KGDTVCEICLQQFKPGYTAPQQLFHYGSIPMNFRGNWEIARQDLHDSQIITMVPSERDFM 174
Query: 553 ESTDVYREKRTRLSAPC 603
+ + Y RTR S C
Sbjct: 175 DGYEDYLPIRTRSSTLC 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,159,527
Number of Sequences: 37544
Number of extensions: 396594
Number of successful extensions: 1083
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -